Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0761 ATGCCGACATGGAAGGAGAGGGAGAACAATAAGAGGAGGGAAAGGAGGAGGAGAGCCATTGCTGCCAAGATTTACTCTGGTCTTAGAGCTCAGGGAAACTATAAGCTCCCTAAACACTGCGACAATAACGAGGTCTTGAAGGCTCTCTGTTCTGAATCTGGTTGGATCGTCGAAGACGATGGCACGACCTACCGCAAGGGATTCAAGCCACCTACAGGCGACATAGCGGGCCCGTCCGTAAACATGAGCTCTTGTTCCTCCCTTCAACTGAGCCCACAATCATCATCCTTCCCAAGCCCCATTCCATCCTACCATGCCAGTCCATCTTCCTCCCCCTTCCAAAGCCCAACCCATTTCGAAAACCCCTCCTCATACCTCCTCCCATTTCTCCAAAACATAGCTTCCATACCCAATAATCTCCCTCCCCTTAGAATATCAAATAGTGCACCTGTAACCCCTCCTCTCTCTTCTCCCACCTCTAGAGGCTCAAAACGGAAGTCAGACTGGGAGACTCTAACCAACGGGTCCTTAACATCTTTCCGCCATCCCCTTTTTGCTGCATCAGCTCCTTCAAGCCCAACCAGACGGGCCCACCTTACCCCGGCCACGATCCCAGAATGTGATGAGTCTGATGCTTCCACCGTGGACTCAGGTCGGTGGGTCAGCTTCCAGATGGTGGGGCCTGCAGGGGGGGCTGCACCGCCTTCGCCAACGTTCAATCTAATGAAGCCGATGAGTCATCAGGGTTTACTCCATGATGGGGTTGACCATGGTGGGGTTGGGCGGGGGATGACCGGAACTGGTGCAGAGTTTGAGTTTGAGAGTGGGACGGTTAAGCCGTGGGAAGGGGAGAGGATTCATGAGGTTGGCGTGGATGAGTTGGAGCTTACTCTTGGAAGTGGGAAGACTCATTAA 915 53.22 MPTWKERENNKRRERRRRAIAAKIYSGLRAQGNYKLPKHCDNNEVLKALCSESGWIVEDDGTTYRKGFKPPTGDIAGPSVNMSSCSSLQLSPQSSSFPSPIPSYHASPSSSPFQSPTHFENPSSYLLPFLQNIASIPNNLPPLRISNSAPVTPPLSSPTSRGSKRKSDWETLTNGSLTSFRHPLFAASAPSSPTRRAHLTPATIPECDESDASTVDSGRWVSFQMVGPAGGAAPPSPTFNLMKPMSHQGLLHDGVDHGGVGRGMTGTGAEFEFESGTVKPWEGERIHEVGVDELELTLGSGKTH 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7015882 7018060 - Conep12aG0078400.1 Cone12ag0761 449605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0761 304 MobiDBLite consensus disorder prediction 77 117 - -
Cone12ag0761 304 MobiDBLite consensus disorder prediction 145 162 - -
Cone12ag0761 304 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 304 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Cone12ag0761 304 MobiDBLite consensus disorder prediction 68 117 - -
Cone12ag0761 304 MobiDBLite consensus disorder prediction 145 169 - -
Cone12ag0761 304 Pfam BES1/BZR1 plant transcription factor, N-terminal 1 121 IPR008540 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0761 K14503 - - mdm:103401849 429.098
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0761 Cone-Chr12:7015882 Cone4ag1892 Cone-Chr4:13494607 9.33E-95 dispersed
Cone12ag0761 Cone-Chr12:7015882 Cone8ag0795 Cone-Chr8:7987106 2.34E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g886 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0761 . . . . . . . . . . . . . . Sed02g0840 . . . . . . . . Bhi10g02238 Tan07g1016 Cmetu11g1488 . Hepe10g0820 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone4ag1892 . 33 310 BZR Transcription Factor Family AT1G75080 67.3 4.9e-91 332.0
Cone7ag1804 . 33 307 BZR Transcription Factor Family AT1G75080 56.7 3.8e-83 305.8
Cone12ag0761 . 19 303 BZR Transcription Factor Family AT1G75080 53.3 3.9e-72 269.2
Cone8ag0795 . 32 321 BZR Transcription Factor Family AT1G75080 54.1 1.3e-70 264.2
Cone4ag1892 . 33 311 BZR Transcription Factor Family AT1G19350 65.1 1.0e-88 324.3
Cone7ag1804 . 33 306 BZR Transcription Factor Family AT1G19350 57.2 5.5e-82 302.0
Cone12ag0761 . 19 304 BZR Transcription Factor Family AT1G19350 55.5 2.2e-75 280.0
Cone8ag0795 . 32 322 BZR Transcription Factor Family AT1G19350 52.6 7.4e-71 265.0
Cone12ag0761 . 1 299 BZR Transcription Factor Family AT3G50750 55.3 2.9e-73 272.7
Cone4ag1892 . 1 305 BZR Transcription Factor Family AT3G50750 55.0 3.2e-64 242.7
Cone6ag0940 . 77 329 BZR Transcription Factor Family AT4G18890 54.5 4.6e-55 211.8
Cone9ag0944 . 77 329 BZR Transcription Factor Family AT4G18890 54.5 7.9e-55 211.1
Cone6ag0940 . 1 329 BZR Transcription Factor Family AT1G78700 71.2 8.9e-114 407.5
Cone9ag0944 . 1 329 BZR Transcription Factor Family AT1G78700 70.6 1.7e-112 403.3
Cone6ag0204 . 1 304 BZR Transcription Factor Family AT1G78700 61.3 1.1e-98 357.5
Cone12ag0761 . 19 191 BZR Transcription Factor Family AT4G36780 78.5 1.7e-62 236.9
Cone8ag0795 . 32 204 BZR Transcription Factor Family AT4G36780 64.4 1.4e-48 190.7
Cone4ag1892 . 33 204 BZR Transcription Factor Family AT4G36780 58.4 2.0e-39 160.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009316 0 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44478 PF16596 MFMR_assoc 1.40E-41 No_clan Cone TF