Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0762 ATGAGTGGAAAAAGAACCCAAACAAACGGCAGCCCCGTCGGAAGCCCGTCTTCCGGAAACATCTCAGACAGCTCCTCGAAAGAGCAAGACCGGTTCCTCCCAATTGCCAACGTGGGCCGCATCATGAAAAAATCCCTCCCCGCAAATGCTAAGATCTCGAAAGAAGCAAAAGAAACAGTCCAAGAATGCGTTTCCGAGTTCATCAGCTTCATAACGGGCGAGGCTTCCGACAAGTGTCAAAGAGAGAAGAGGAAGACGATCAACGGCGACGATCTCTTGTGGGCCATGACTACTCTAGGGTTTGAGAATTATGTGGGACCCTTGAAGGTTTATCTTAGTAAGTATAGAGAGACTGAGGAGGAGAAGCATTCTCTAGCTAGAATACAAGATCAAGACCCTAATCACCCTGATCAAGATCACTCTCCTCCAGCCAAAACTCCTAAGAATGACCCGACTTGTCAAAATGTGGATTTCCAGAATCTTAATGGCGGGATTTATTCGCTTGGGACACAAGTTACTACTAGTACTAATAGTTCTGTCGGAAGGGTGATTGGCTATGGAGAAAACTTGATGACAAGAGCTTTTAATATCAGTGGCGTGCATGAAAACATGGGTGATGGAAATGGTAGAAAAGCTGCTGCCATGGCAGCTCATCTTCATCACGGATCTGGGTGGTAA 678 46.46 MSGKRTQTNGSPVGSPSSGNISDSSSKEQDRFLPIANVGRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLSKYRETEEEKHSLARIQDQDPNHPDQDHSPPAKTPKNDPTCQNVDFQNLNGGIYSLGTQVTTSTNSSVGRVIGYGENLMTRAFNISGVHENMGDGNGRKAAAMAAHLHHGSGW 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7020540 7021217 - Conep12aG0078500.1 Cone12ag0762 449606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0762 225 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Cone12ag0762 225 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Cone12ag0762 225 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Cone12ag0762 225 MobiDBLite consensus disorder prediction 122 153 - -
Cone12ag0762 225 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag0762 225 FunFam Nuclear transcription factor Y subunit B-3 21 145 - -
Cone12ag0762 225 MobiDBLite consensus disorder prediction 1 29 - -
Cone12ag0762 225 Gene3D Histone, subunit A 19 150 IPR009072 GO:0046982(InterPro)
Cone12ag0762 225 MobiDBLite consensus disorder prediction 122 144 - -
Cone12ag0762 225 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 155 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cone12ag0762 225 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Cone12ag0762 225 SUPERFAMILY Histone-fold 29 162 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0762 Cone-Chr12:7020540 Cone12ag1312 Cone-Chr12:9924263 3.75E-55 dispersed
Cone12ag0762 Cone-Chr12:7020540 Cone8ag0794 Cone-Chr8:7983909 8.86E-143 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44479 PF16596 MFMR_assoc 1.40E-41 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0762 K08065 - csv:101214273 282.337