Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone12ag0762 | ATGAGTGGAAAAAGAACCCAAACAAACGGCAGCCCCGTCGGAAGCCCGTCTTCCGGAAACATCTCAGACAGCTCCTCGAAAGAGCAAGACCGGTTCCTCCCAATTGCCAACGTGGGCCGCATCATGAAAAAATCCCTCCCCGCAAATGCTAAGATCTCGAAAGAAGCAAAAGAAACAGTCCAAGAATGCGTTTCCGAGTTCATCAGCTTCATAACGGGCGAGGCTTCCGACAAGTGTCAAAGAGAGAAGAGGAAGACGATCAACGGCGACGATCTCTTGTGGGCCATGACTACTCTAGGGTTTGAGAATTATGTGGGACCCTTGAAGGTTTATCTTAGTAAGTATAGAGAGACTGAGGAGGAGAAGCATTCTCTAGCTAGAATACAAGATCAAGACCCTAATCACCCTGATCAAGATCACTCTCCTCCAGCCAAAACTCCTAAGAATGACCCGACTTGTCAAAATGTGGATTTCCAGAATCTTAATGGCGGGATTTATTCGCTTGGGACACAAGTTACTACTAGTACTAATAGTTCTGTCGGAAGGGTGATTGGCTATGGAGAAAACTTGATGACAAGAGCTTTTAATATCAGTGGCGTGCATGAAAACATGGGTGATGGAAATGGTAGAAAAGCTGCTGCCATGGCAGCTCATCTTCATCACGGATCTGGGTGGTAA | 678 | 46.46 | MSGKRTQTNGSPVGSPSSGNISDSSSKEQDRFLPIANVGRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLSKYRETEEEKHSLARIQDQDPNHPDQDHSPPAKTPKNDPTCQNVDFQNLNGGIYSLGTQVTTSTNSSVGRVIGYGENLMTRAFNISGVHENMGDGNGRKAAAMAAHLHHGSGW | 225 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 7020540 | 7021217 | - | Conep12aG0078500.1 | Cone12ag0762 | 449606 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone12ag0762 | 225 | PRINTS | CCAAT-binding transcription factor subunit A signature | 79 | 97 | - | - | |
Cone12ag0762 | 225 | PRINTS | CCAAT-binding transcription factor subunit A signature | 60 | 78 | - | - | |
Cone12ag0762 | 225 | PRINTS | CCAAT-binding transcription factor subunit A signature | 98 | 116 | - | - | |
Cone12ag0762 | 225 | MobiDBLite | consensus disorder prediction | 122 | 153 | - | - | |
Cone12ag0762 | 225 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 63 | 79 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone12ag0762 | 225 | FunFam | Nuclear transcription factor Y subunit B-3 | 21 | 145 | - | - | |
Cone12ag0762 | 225 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Cone12ag0762 | 225 | Gene3D | Histone, subunit A | 19 | 150 | IPR009072 | GO:0046982(InterPro) | |
Cone12ag0762 | 225 | MobiDBLite | consensus disorder prediction | 122 | 144 | - | - | |
Cone12ag0762 | 225 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 18 | 155 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) | |
Cone12ag0762 | 225 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 32 | 96 | IPR003958 | - | |
Cone12ag0762 | 225 | SUPERFAMILY | Histone-fold | 29 | 162 | IPR009072 | GO:0046982(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag0762 | Cone-Chr12:7020540 | Cone12ag1312 | Cone-Chr12:9924263 | 3.75E-55 | dispersed | |
Cone12ag0762 | Cone-Chr12:7020540 | Cone8ag0794 | Cone-Chr8:7983909 | 8.86E-143 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44479 | PF16596 | MFMR_assoc | 1.40E-41 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone12ag0762 | K08065 | - | csv:101214273 | 282.337 |