Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0766 ATGGAGACAGAGTCATCGGAAGGAGAAGAAGATATGAAGCTTACACGAGGTAATCGAGTGCTAATGGTGGATGATGACCTTAGGGAAATGGGGAAGAAGGCTGCTTGGAGTGTAAGCTCCTGCAAGCCTGGTAATGGCGTCTTTGCTCTAAGAGATGATACCCTCGAAAGATCAGATGTCGCACAGCCTCATTTGGTAAACATTCAGTTCCAGAAAAAAGTTAAGCTGCAACTAGTTGTCGTCTATGTGGATATCGAGGTCGATGAAAGCTATACACTGAGTGAGATATCAATTCGTGCTGGGGATGGATTCCACAACCTAAAGGAAATAAAGACAGTGAAGCTTGTTCAGCCAACTGGGTGGGTTTATCTATCCTTGTATGGTACTGATCCCAGGGAAACTCTTGTGAACACTTTCATGTTACAAATTGCTGTCTTGGCTAATCATCTGAATGGGAGGGATGCTCATGTCCGCCAGATCAAAGTTTACAGCCTCGACCGAATCTGA 507 44.77 METESSEGEEDMKLTRGNRVLMVDDDLREMGKKAAWSVSSCKPGNGVFALRDDTLERSDVAQPHLVNIQFQKKVKLQLVVVYVDIEVDESYTLSEISIRAGDGFHNLKEIKTVKLVQPTGWVYLSLYGTDPRETLVNTFMLQIAVLANHLNGRDAHVRQIKVYSLDRI 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7045263 7046544 + Conep12aG0078900.1 Cone12ag0766 449610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0766 168 SUPERFAMILY Galactose-binding domain-like 22 164 IPR008979 -
Cone12ag0766 168 ProSiteProfiles DOC domain profile. 6 168 IPR004939 -
Cone12ag0766 168 PIRSF APC10 2 167 IPR016901 GO:0005680(InterPro)|GO:0031145(InterPro)
Cone12ag0766 168 PANTHER ANAPHASE-PROMOTING COMPLEX 10 10 165 IPR016901 GO:0005680(InterPro)|GO:0005680(PANTHER)|GO:0031145(InterPro)|GO:0070979(PANTHER)
Cone12ag0766 168 Pfam Anaphase-promoting complex, subunit 10 (APC10) 13 164 IPR004939 -
Cone12ag0766 168 CDD APC10 28 164 IPR016901 GO:0005680(InterPro)|GO:0031145(InterPro)
Cone12ag0766 168 Gene3D - 1 164 - -
Cone12ag0766 168 SMART APC10_2 27 168 IPR004939 -
Cone12ag0766 168 FunFam Anaphase-promoting complex subunit 10 1 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0766 K03357 - - csv:101218217 258.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0766 Cone-Chr12:7045263 Cone8ag0815 Cone-Chr8:8178328 6.94E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g986 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0815 Cone12ag0766 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011693 1 1 1 2 1 0 1 1 1 1 1 0 1 1 1 1 1 2 1 0 1 1 1 1 0 1 1 1 3 1 30