Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0771 ATGGAGCTATCGTTTCAGACGGTTTCTACTCTTCCCCGTAATAGATTTCATCCTCGTTCTCAGTGTAAAACAGTACTCTTGACCTCGTTATACAACGAACAAACTTCCCTTCCTCCTCTCTCACGATCTTCTTTACGATACAATAATTTCCAGTTCAGTTCCAAGCTTATTGGATTCAAGACCCCGACCCCTGTACTTTCTCTAACAAGCCAGCAGGTTTTCGTCAGAGAGCGAGAAAATCTTGAAGAAGAAGAAGAAGAAGGAGATGAGGACGAGGAAGAAGAAACGAGCCATCTATACTCGGAGGACGATTCCTCTTTCCTGTCTCTGAATGTTAAGCCTGACAGGAACATGGCTTTGCTCGACGATTACGAGATTGAGGAGCTTGATTATGTTCCCGACCCCAATCATCGAAGTGGATATGTAGCTCTTCTAGGGAAGCCGAATGTGGGAAAGAGTACATTAGCAAATCAGATGATAGGCCAAAAGCTATCTATTGTAACAGATAAGCCACAGACCACTAGGCACCGTGTTCTTGGCATCTCTTCTGGCCAAGACTATCAGATGATTCTTTATGATACACCAGGTGTAATTGAGAAGAGGATGCACAAGTTGGACTCCATGATGATGCAAAATGTTCGAAGTGCTGCCATTAATGCAGACTGTGTACTAGTTCTTGTTGATGCATGTAAACTGCCTCAAAATATTGAGGAAGTGTTAGAAGAAGGTGTGGGAGACCTCAAACGGAAGCCACCTGTTTTGCTGGTATTGAATAAGAAGGATCTGATCAAACCCGGTGAAGTTGCAAAGAAACTTGAGTGGTTTGAGAAATTTACGGATGCTGATGAGGTCATACCTGTGAGTGCTAAATATGGTCAAGGCGTGGAAGATGTGAAAGATTGGATACTATCAAAACTTCCTCTTGGACCTGCTTATTATCCCAAGGACATTGTCAGTGAGCACCCAGAGAGATTCTTTGTTTCCGAGATTGTAAGAGAAAAGATCTTTATGCAGTATCGCAAAGAAGTTCCTTATGCTTGCCAGGTGAATGTAGCGAGCTACAAAACAAGACCAACTGCAAAAGATTTTATACAAATTGAAATTGTCGTTGAGAGAAATTCACAGAAGGTCATCCTAATCGGTAAAGAGGGAAAGGCATTGAAATTACTTGCAACGGCTGCCAGGCTCGACATAGAAGATTTCCTACAGAAGAAAGTTTACCTTGAGGTCGAAGTTAAAGTGAAAGAAAACTGGCGGCAGGATGAAGGGCTTCTGAAGCATTACGGTTATGGAGGACAAATTCGAGCATTATAA 1314 42.47 MELSFQTVSTLPRNRFHPRSQCKTVLLTSLYNEQTSLPPLSRSSLRYNNFQFSSKLIGFKTPTPVLSLTSQQVFVRERENLEEEEEEGDEDEEEETSHLYSEDDSSFLSLNVKPDRNMALLDDYEIEELDYVPDPNHRSGYVALLGKPNVGKSTLANQMIGQKLSIVTDKPQTTRHRVLGISSGQDYQMILYDTPGVIEKRMHKLDSMMMQNVRSAAINADCVLVLVDACKLPQNIEEVLEEGVGDLKRKPPVLLVLNKKDLIKPGEVAKKLEWFEKFTDADEVIPVSAKYGQGVEDVKDWILSKLPLGPAYYPKDIVSEHPERFFVSEIVREKIFMQYRKEVPYACQVNVASYKTRPTAKDFIQIEIVVERNSQKVILIGKEGKALKLLATAARLDIEDFLQKKVYLEVEVKVKENWRQDEGLLKHYGYGGQIRAL 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7079747 7083064 + Conep12aG0079400.1 Cone12ag0771 449615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0771 437 Coils Coil 74 94 - -
Cone12ag0771 437 Gene3D - 135 317 IPR027417 -
Cone12ag0771 437 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 138 308 IPR030388 GO:0005525(InterPro)
Cone12ag0771 437 MobiDBLite consensus disorder prediction 79 105 - -
Cone12ag0771 437 NCBIfam GTPase Era 140 413 IPR005662 GO:0003723(InterPro)|GO:0005525(InterPro)
Cone12ag0771 437 CDD Era 137 306 IPR030388 GO:0005525(InterPro)
Cone12ag0771 437 PANTHER GTPASE ERA 86 427 IPR005662 GO:0000028(PANTHER)|GO:0003723(InterPro)|GO:0005525(InterPro)|GO:0019843(PANTHER)|GO:0043024(PANTHER)
Cone12ag0771 437 Hamap GTPase Era [era]. 137 430 IPR005662 GO:0003723(InterPro)|GO:0005525(InterPro)
Cone12ag0771 437 FunFam GTPase Era 319 433 - -
Cone12ag0771 437 ProSiteProfiles Type-2 KH domain profile. 339 416 IPR004044 GO:0003723(InterPro)
Cone12ag0771 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 340 IPR027417 -
Cone12ag0771 437 NCBIfam small GTP-binding protein domain 142 301 IPR005225 GO:0005525(InterPro)
Cone12ag0771 437 Gene3D - 319 434 IPR015946 -
Cone12ag0771 437 Pfam KH domain 342 419 IPR004044 GO:0003723(InterPro)
Cone12ag0771 437 FunFam GTPase Era 135 318 - -
Cone12ag0771 437 Pfam 50S ribosome-binding GTPase 142 259 IPR006073 GO:0005525(InterPro)
Cone12ag0771 437 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 315 430 IPR009019 GO:0003723(InterPro)
Cone12ag0771 437 CDD KH-II_Era 328 414 - -
Cone12ag0771 437 MobiDBLite consensus disorder prediction 80 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0771 K03595 - - rcu:8273370 578.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0771 Cone-Chr12:7079747 Cone1ag0446 Cone-Chr1:4031141 2.03E-08 dispersed
Cone12ag0771 Cone-Chr12:7079747 Cone8ag0820 Cone-Chr8:8196845 6.30E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1003 . . . Bda10g00141 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0771 . . . . Chy07g01293 . . . . . Bpe10g00123 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00550 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010370 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 32