Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0789 ATGGATGAGCATAACTTGAATGGCGGCGATGAAGATGCTGCGTCTGATATTGAAAACTTGGACGGGAAGGAGATTCCGAGGTTATGGTCTCAGTTTTCCGACAAGAACTTCTCCCACTCTGAACCGCTGCTTCAGAGGAGGCTTAACACTACTTCTCAGATTGCCATTGTTGGTTCTAACCTCTGTTCTATAGAGAGCCTTGACTATGAGATTATTGAAAATGAATTATTTAAGCAGGACTGGAGGTCGAGGAAGAAAGTTCAGATATTTCAGTATGTTGTGCTCAAGTGGGCTTTTGCTCTTATTATCGGGCTTGGTACTGGATTGGTCGGCTTCTTCAATAATATTGCAGTCGAGAATATAGCTGGTTATAAGCTACTGCTGACTAGTGAATTGATGAACCAGGAAAAATATATCATGGCCTTCATAGCATATGCTGGTTGTAATGTAGTTTTAGCAGCTGCTGCTGCTGCTCTTTGTGCTTACATTGCTCCAGCAGCAGCAGGCTCTGGAATTCCTGAGGTGAAAGCCTATCTCAATGGCATTGATGCATATTCAATACTTGCACCAAGTACTCTCTTTGTCAAGATATTTGGTTCCATTCTTGGTGTTTCTGCTGGATTTGTGGTTGGTAAAGAAGGGCCAATGGTACACACAGGTGCTTGCATAGCCTCTTTACTAGGACAAGGGGGTTCTCGTAAATACCATTTGACATGGAAATGGCTCAGATACTTCAAAAATGACCGGGATAGGCGAGACATGATCACTTGTGGTGCTGCTGCTGGTGTAGCCGCTGCTTTTCGCGCTCCGGTTGGAGGTGTTCTTTTTGCCCTTGAAGAGGCTGCATCATGGTGGAGGAGTGCACTTCTTTGGAGGACCTTTTTCACAACAGCTGTAGTAGCTATAGTTTTAAGAGGTTTCATACAATTTTGTTCAACCGGAACTTGTGGGCTATTTGGGGAAGGAGGTCTGATAATGTATGATGTTAGTTCATCAAGTTCAACATATAACGGGTCCGATATATTGGCAGTGATAGTCTTAGGAATTATTGGCGGCATCCTTGGAAGCATATACAACTATCTAGTGGACAAGGTCATCCGTACTTACAGCTTTATAAATGAAAGAGGTGCAGCTTATAAAGTCTTGCTCGTCGTAGCAATCTCCTTATTGACATCATGTTGCTCATATGGCATCCCATGGCTAGCAAGCTGTCTGACCTGCCCTACTGAGGTCACAGTGAGCTGCCCTACTGTAGGCGAATCGGGCAACTACAATAGCTTCCAGTGCTCATCCGGCTACTATAATGACCTTGCCTCTCTATTTCTAAACACTAATGACGATGCAATCCGAAACCTTTTCAGCAGCAGTTCTGAAAAAACCTTCCAAATCTCAACTCTCCTCATTTTCTTTGCTGCTGTTTATGTCCTAGGAATCATCACCTATGGCATTGCTATCCCTTCTGGGCTCTTCATTCCTGTCATTCTAGCCGGAGCATGCTATGGCCGCCTAGTGGGTAGATTATTCGAGCCTATCTCTACTCTTGACACGGGGTTATTTGCCCTACTTGGAGCTGCCTCCTTCCTTGGTGGGACCATGCGAATGACCGTTTCCCTATGTGTCATACTCCTCGAGCTCACTAACGACTTGCTCCTACTTCCTCTTGTCATGTTGGTTCTTCTTATATCTAAAACTGTAGCTGATAGCTTCAATTCAGGTGTCTATGACCAAATATTGAAGATTAAGGGATTGCCTTATTTAGAGGCACATGCTGAACCCTACATGAGGCAGTTAGTAGCACGGGATGCTGTTGTTGGTCCCTTGCTGACATTTTCGGGCATTGAAAAAGTAGGGAATATACTTCATGCATTAAAGACTACAGAGCACAATGGTTTTCCAGTTATTGATGAGCCGCCCTTTTCTGATGCGCCCGAGTTATGTGGATTGGTTTTGAGGTCTCATTTACTTGTTTTGTTAAAAGGGAAGTTTTTTTCCACAGAAAGGGTTACAACGGGTGAAGAGATATTGCATCAATTTGCCGCATTTGATTTTGCCAAGGCAGGATCAGGGAAGGGAATCAAGCTCGAGGATCTTGATATAGGTGAGGATGAGATAGAGATGTATGTGGATCTTCATCCCATCACGAATGCATCTCCTTACACGGTTGTAGAGACAATGTCATTAGCTAAAGCCAAGATTCTTTTCAGACAGCTTGGGCTTCGGCATATGTGCGTCGTTCCAAAGAGTCGAGGGAGGCCACCTATTGTCGGGATTTTGACAAGGCATGACTTCATGCCGGAGCATGTTTTGGGCCTTTATCCTCATTTCAAGCCTCATAAGTAG 2340 44.27 MDEHNLNGGDEDAASDIENLDGKEIPRLWSQFSDKNFSHSEPLLQRRLNTTSQIAIVGSNLCSIESLDYEIIENELFKQDWRSRKKVQIFQYVVLKWAFALIIGLGTGLVGFFNNIAVENIAGYKLLLTSELMNQEKYIMAFIAYAGCNVVLAAAAAALCAYIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTWKWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRGFIQFCSTGTCGLFGEGGLIMYDVSSSSSTYNGSDILAVIVLGIIGGILGSIYNYLVDKVIRTYSFINERGAAYKVLLVVAISLLTSCCSYGIPWLASCLTCPTEVTVSCPTVGESGNYNSFQCSSGYYNDLASLFLNTNDDAIRNLFSSSSEKTFQISTLLIFFAAVYVLGIITYGIAIPSGLFIPVILAGACYGRLVGRLFEPISTLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLLLPLVMLVLLISKTVADSFNSGVYDQILKIKGLPYLEAHAEPYMRQLVARDAVVGPLLTFSGIEKVGNILHALKTTEHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKGKFFSTERVTTGEEILHQFAAFDFAKAGSGKGIKLEDLDIGEDEIEMYVDLHPITNASPYTVVETMSLAKAKILFRQLGLRHMCVVPKSRGRPPIVGILTRHDFMPEHVLGLYPHFKPHK 779
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 7236184 7242091 + Conep12aG0081200.1 Cone12ag0789 449633
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0789 779 SUPERFAMILY Clc chloride channel 74 589 IPR014743 -
Cone12ag0789 779 ProSiteProfiles CBS domain profile. 713 777 IPR000644 -
Cone12ag0789 779 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 46 767 IPR051280 GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER)
Cone12ag0789 779 Pfam Voltage gated chloride channel 153 567 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag0789 779 Pfam CBS domain 716 764 IPR000644 -
Cone12ag0789 779 SUPERFAMILY CBS-domain pair 590 764 IPR046342 -
Cone12ag0789 779 PRINTS Chloride channel signature 535 554 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag0789 779 PRINTS Chloride channel signature 573 587 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag0789 779 PRINTS Chloride channel signature 260 279 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag0789 779 PRINTS Chloride channel signature 517 533 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag0789 779 PRINTS Chloride channel signature 165 182 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag0789 779 PRINTS Chloride channel signature 485 505 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag0789 779 PRINTS Chloride channel signature 196 215 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone12ag0789 779 Gene3D - 594 764 IPR046342 -
Cone12ag0789 779 FunFam Chloride channel ClC3 88 406 - -
Cone12ag0789 779 CDD CBS_pair_voltage-gated_CLC_euk_bac 589 766 - -
Cone12ag0789 779 PRINTS Plant CLC chloride channel signature 281 289 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Cone12ag0789 779 PRINTS Plant CLC chloride channel signature 313 320 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Cone12ag0789 779 PRINTS Plant CLC chloride channel signature 70 78 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Cone12ag0789 779 PRINTS Plant CLC chloride channel signature 295 305 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Cone12ag0789 779 PRINTS Plant CLC chloride channel signature 437 453 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Cone12ag0789 779 Gene3D Clc chloride channel 88 587 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0861 Cone-Chr10:4442587 Cone12ag0789 Cone-Chr12:7236184 0 dispersed
Cone12ag0789 Cone-Chr12:7236184 Cone3ag0892 Cone-Chr3:4599137 0 dispersed
Cone14ag0840 Cone-Chr14:5213351 Cone12ag0789 Cone-Chr12:7236184 9.59E-226 transposed
Cone12ag0789 Cone-Chr12:7236184 Cone8ag0780 Cone-Chr8:7787359 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0789 K05016 - mdm:103425332 1187.94