Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone12ag0789 | ATGGATGAGCATAACTTGAATGGCGGCGATGAAGATGCTGCGTCTGATATTGAAAACTTGGACGGGAAGGAGATTCCGAGGTTATGGTCTCAGTTTTCCGACAAGAACTTCTCCCACTCTGAACCGCTGCTTCAGAGGAGGCTTAACACTACTTCTCAGATTGCCATTGTTGGTTCTAACCTCTGTTCTATAGAGAGCCTTGACTATGAGATTATTGAAAATGAATTATTTAAGCAGGACTGGAGGTCGAGGAAGAAAGTTCAGATATTTCAGTATGTTGTGCTCAAGTGGGCTTTTGCTCTTATTATCGGGCTTGGTACTGGATTGGTCGGCTTCTTCAATAATATTGCAGTCGAGAATATAGCTGGTTATAAGCTACTGCTGACTAGTGAATTGATGAACCAGGAAAAATATATCATGGCCTTCATAGCATATGCTGGTTGTAATGTAGTTTTAGCAGCTGCTGCTGCTGCTCTTTGTGCTTACATTGCTCCAGCAGCAGCAGGCTCTGGAATTCCTGAGGTGAAAGCCTATCTCAATGGCATTGATGCATATTCAATACTTGCACCAAGTACTCTCTTTGTCAAGATATTTGGTTCCATTCTTGGTGTTTCTGCTGGATTTGTGGTTGGTAAAGAAGGGCCAATGGTACACACAGGTGCTTGCATAGCCTCTTTACTAGGACAAGGGGGTTCTCGTAAATACCATTTGACATGGAAATGGCTCAGATACTTCAAAAATGACCGGGATAGGCGAGACATGATCACTTGTGGTGCTGCTGCTGGTGTAGCCGCTGCTTTTCGCGCTCCGGTTGGAGGTGTTCTTTTTGCCCTTGAAGAGGCTGCATCATGGTGGAGGAGTGCACTTCTTTGGAGGACCTTTTTCACAACAGCTGTAGTAGCTATAGTTTTAAGAGGTTTCATACAATTTTGTTCAACCGGAACTTGTGGGCTATTTGGGGAAGGAGGTCTGATAATGTATGATGTTAGTTCATCAAGTTCAACATATAACGGGTCCGATATATTGGCAGTGATAGTCTTAGGAATTATTGGCGGCATCCTTGGAAGCATATACAACTATCTAGTGGACAAGGTCATCCGTACTTACAGCTTTATAAATGAAAGAGGTGCAGCTTATAAAGTCTTGCTCGTCGTAGCAATCTCCTTATTGACATCATGTTGCTCATATGGCATCCCATGGCTAGCAAGCTGTCTGACCTGCCCTACTGAGGTCACAGTGAGCTGCCCTACTGTAGGCGAATCGGGCAACTACAATAGCTTCCAGTGCTCATCCGGCTACTATAATGACCTTGCCTCTCTATTTCTAAACACTAATGACGATGCAATCCGAAACCTTTTCAGCAGCAGTTCTGAAAAAACCTTCCAAATCTCAACTCTCCTCATTTTCTTTGCTGCTGTTTATGTCCTAGGAATCATCACCTATGGCATTGCTATCCCTTCTGGGCTCTTCATTCCTGTCATTCTAGCCGGAGCATGCTATGGCCGCCTAGTGGGTAGATTATTCGAGCCTATCTCTACTCTTGACACGGGGTTATTTGCCCTACTTGGAGCTGCCTCCTTCCTTGGTGGGACCATGCGAATGACCGTTTCCCTATGTGTCATACTCCTCGAGCTCACTAACGACTTGCTCCTACTTCCTCTTGTCATGTTGGTTCTTCTTATATCTAAAACTGTAGCTGATAGCTTCAATTCAGGTGTCTATGACCAAATATTGAAGATTAAGGGATTGCCTTATTTAGAGGCACATGCTGAACCCTACATGAGGCAGTTAGTAGCACGGGATGCTGTTGTTGGTCCCTTGCTGACATTTTCGGGCATTGAAAAAGTAGGGAATATACTTCATGCATTAAAGACTACAGAGCACAATGGTTTTCCAGTTATTGATGAGCCGCCCTTTTCTGATGCGCCCGAGTTATGTGGATTGGTTTTGAGGTCTCATTTACTTGTTTTGTTAAAAGGGAAGTTTTTTTCCACAGAAAGGGTTACAACGGGTGAAGAGATATTGCATCAATTTGCCGCATTTGATTTTGCCAAGGCAGGATCAGGGAAGGGAATCAAGCTCGAGGATCTTGATATAGGTGAGGATGAGATAGAGATGTATGTGGATCTTCATCCCATCACGAATGCATCTCCTTACACGGTTGTAGAGACAATGTCATTAGCTAAAGCCAAGATTCTTTTCAGACAGCTTGGGCTTCGGCATATGTGCGTCGTTCCAAAGAGTCGAGGGAGGCCACCTATTGTCGGGATTTTGACAAGGCATGACTTCATGCCGGAGCATGTTTTGGGCCTTTATCCTCATTTCAAGCCTCATAAGTAG | 2340 | 44.27 | MDEHNLNGGDEDAASDIENLDGKEIPRLWSQFSDKNFSHSEPLLQRRLNTTSQIAIVGSNLCSIESLDYEIIENELFKQDWRSRKKVQIFQYVVLKWAFALIIGLGTGLVGFFNNIAVENIAGYKLLLTSELMNQEKYIMAFIAYAGCNVVLAAAAAALCAYIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTWKWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRGFIQFCSTGTCGLFGEGGLIMYDVSSSSSTYNGSDILAVIVLGIIGGILGSIYNYLVDKVIRTYSFINERGAAYKVLLVVAISLLTSCCSYGIPWLASCLTCPTEVTVSCPTVGESGNYNSFQCSSGYYNDLASLFLNTNDDAIRNLFSSSSEKTFQISTLLIFFAAVYVLGIITYGIAIPSGLFIPVILAGACYGRLVGRLFEPISTLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLLLPLVMLVLLISKTVADSFNSGVYDQILKIKGLPYLEAHAEPYMRQLVARDAVVGPLLTFSGIEKVGNILHALKTTEHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKGKFFSTERVTTGEEILHQFAAFDFAKAGSGKGIKLEDLDIGEDEIEMYVDLHPITNASPYTVVETMSLAKAKILFRQLGLRHMCVVPKSRGRPPIVGILTRHDFMPEHVLGLYPHFKPHK | 779 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 7236184 | 7242091 | + | Conep12aG0081200.1 | Cone12ag0789 | 449633 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone12ag0789 | 779 | SUPERFAMILY | Clc chloride channel | 74 | 589 | IPR014743 | - | |
| Cone12ag0789 | 779 | ProSiteProfiles | CBS domain profile. | 713 | 777 | IPR000644 | - | |
| Cone12ag0789 | 779 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 46 | 767 | IPR051280 | GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Cone12ag0789 | 779 | Pfam | Voltage gated chloride channel | 153 | 567 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone12ag0789 | 779 | Pfam | CBS domain | 716 | 764 | IPR000644 | - | |
| Cone12ag0789 | 779 | SUPERFAMILY | CBS-domain pair | 590 | 764 | IPR046342 | - | |
| Cone12ag0789 | 779 | PRINTS | Chloride channel signature | 535 | 554 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone12ag0789 | 779 | PRINTS | Chloride channel signature | 573 | 587 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone12ag0789 | 779 | PRINTS | Chloride channel signature | 260 | 279 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone12ag0789 | 779 | PRINTS | Chloride channel signature | 517 | 533 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone12ag0789 | 779 | PRINTS | Chloride channel signature | 165 | 182 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone12ag0789 | 779 | PRINTS | Chloride channel signature | 485 | 505 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone12ag0789 | 779 | PRINTS | Chloride channel signature | 196 | 215 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone12ag0789 | 779 | Gene3D | - | 594 | 764 | IPR046342 | - | |
| Cone12ag0789 | 779 | FunFam | Chloride channel ClC3 | 88 | 406 | - | - | |
| Cone12ag0789 | 779 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 589 | 766 | - | - | |
| Cone12ag0789 | 779 | PRINTS | Plant CLC chloride channel signature | 281 | 289 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone12ag0789 | 779 | PRINTS | Plant CLC chloride channel signature | 313 | 320 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone12ag0789 | 779 | PRINTS | Plant CLC chloride channel signature | 70 | 78 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone12ag0789 | 779 | PRINTS | Plant CLC chloride channel signature | 295 | 305 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone12ag0789 | 779 | PRINTS | Plant CLC chloride channel signature | 437 | 453 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone12ag0789 | 779 | Gene3D | Clc chloride channel | 88 | 587 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone10ag0861 | Cone-Chr10:4442587 | Cone12ag0789 | Cone-Chr12:7236184 | 0 | dispersed | |
| Cone12ag0789 | Cone-Chr12:7236184 | Cone3ag0892 | Cone-Chr3:4599137 | 0 | dispersed | |
| Cone14ag0840 | Cone-Chr14:5213351 | Cone12ag0789 | Cone-Chr12:7236184 | 9.59E-226 | transposed | |
| Cone12ag0789 | Cone-Chr12:7236184 | Cone8ag0780 | Cone-Chr8:7787359 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone12ag0789 | K05016 | - | mdm:103425332 | 1187.94 |