Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0808 ATGGCTTCTGCTTATGCAGCCTCCTCTTCTATTGCCGCTGTTGCTGTTTCTAATTCTCTCCGCTCCCAAAAGGGTTCTAATTTCCTTGTTGGGAGGAAGTTGAGTGTGAGAAAGCCCAAGGCAGCTAGTAGTTCATCTGGGGGAAGAGTAGTAGGACCGCTTTGTGCAGTAGCTGACCCTTCGGAGAGGCCACTCTGGTTCCCCGGAAGCACCCCTCCTCCATGGCTCGACGGCTCCCTCCCCGGTGACTTTGGTTTTGACCCCCTTGGTCTTGCATCTGACCCTGAAAGCTTGAGATGGAACCAGCAAGCGGAGCTAGTGCACTGCAGATGGGCAATGTTAGGAGCTGCCGGTATTTTCATCCCGGAATTCCTAACCAAGATTGGAATCCTCAACACCCCTTCATGGTACACGGCTGGGGAGCTCGAATACTTCACCGACACAACCACCCTCTTTGTAGTTGAGTTGGTTTTGATTGGGTGGGCCGAAGGGAGAAGGTGGGCCGACATTCTTAAGCCTGGGAGTGTCAACACGGACCCGATTTTCCCAAACAACAAGCTCACCGGGACAGATGTCGGATACCCGGGCGGGCTTTGGTTTGACCCTCTTGGGTGGGGGAGTGGGTCCCCCGAGAAGATTAAGGAATTGAGAACAAAAGAGATCAAGAATGGCAGATTAGCTATGTTGGCTGTGATGGGTGCTTGGTTCCAACATATCTATACTGGAACTGGCCCGATTGACAACCTCTTCGCCCACCTTGCGGATCCGGGTCATGCTACCATTTTTTCTTCTTTTACTCCCAAGTGA 807 52.42 MASAYAASSSIAAVAVSNSLRSQKGSNFLVGRKLSVRKPKAASSSSGGRVVGPLCAVADPSERPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELVLIGWAEGRRWADILKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFSSFTPK 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7362530 7364650 - Conep12aG0083300.1 Cone12ag0808 449652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0808 268 SUPERFAMILY Chlorophyll a-b binding protein 56 266 - -
Cone12ag0808 268 Gene3D Chlorophyll a/b binding protein domain 73 258 - -
Cone12ag0808 268 Pfam Chlorophyll A-B binding protein 72 238 IPR022796 -
Cone12ag0808 268 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 7 261 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Cone12ag0808 268 FunFam Chlorophyll a-b binding protein, chloroplastic 73 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0808 Cone-Chr12:7362530 Cone13ag0367 Cone-Chr13:3363953 1.07E-168 dispersed
Cone12ag0808 Cone-Chr12:7362530 Cone8ag0754 Cone-Chr8:7634588 3.75E-197 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0808 K08908 - csv:101214055 468.774