Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0815 ATGGCGGAAGAAGAGTCCAGGCAGACGATCGGGCCAGAGTTCCCGACGGGTCGGGTCAAAAGAATCATGAAGCTGGATAAGGACATCAACAAGGTGAATTCAGAAGCTCTATTTCTCGTCACGTGCTCCACTGAGCTCTTCGTCAGGTTTTTGGCTGAGAAATCTGCAGAAGTGGCCATAGAAAAGAAGCGGAAGACCGTGAAGCTTGAACACATCAGAATTGCCACCAAAAGGCACAGGCCGACAAGTGAGTTCCTCCTCGATTCGCTTCCTACACCACCTGAGCCCTCAAAAAATCAATCGTCCAATCTGAACAAAACTCGCTCTGTGGCTGATAAAGTGCCTGAAGCTCGCACTCGTAAAATTGATGATTTCTTCAGCAAGCCATCAAATGAGGCTACAGTTCAGATCAATGAGTCATAA 423 47.75 MAEEESRQTIGPEFPTGRVKRIMKLDKDINKVNSEALFLVTCSTELFVRFLAEKSAEVAIEKKRKTVKLEHIRIATKRHRPTSEFLLDSLPTPPEPSKNQSSNLNKTRSVADKVPEARTRKIDDFFSKPSNEATVQINES 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7435453 7435919 + Conep12aG0084000.1 Cone12ag0815 449659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0815 140 Gene3D Histone, subunit A 1 92 IPR009072 GO:0046982(InterPro)
Cone12ag0815 140 MobiDBLite consensus disorder prediction 93 109 - -
Cone12ag0815 140 MobiDBLite consensus disorder prediction 83 125 - -
Cone12ag0815 140 MobiDBLite consensus disorder prediction 111 125 - -
Cone12ag0815 140 SUPERFAMILY Histone-fold 8 107 IPR009072 GO:0046982(InterPro)
Cone12ag0815 140 FunFam Nuclear factor Y, subunit C13 1 91 - -
Cone12ag0815 140 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 75 IPR003958 -
Cone12ag0815 140 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 12 116 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0815 Cone-Chr12:7435453 Cone8ag0749 Cone-Chr8:7561785 1.71E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44483 PF00270 DEAD 2.50E-11 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0815 - - - 0.0