Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0815 ATGGCGGAAGAAGAGTCCAGGCAGACGATCGGGCCAGAGTTCCCGACGGGTCGGGTCAAAAGAATCATGAAGCTGGATAAGGACATCAACAAGGTGAATTCAGAAGCTCTATTTCTCGTCACGTGCTCCACTGAGCTCTTCGTCAGGTTTTTGGCTGAGAAATCTGCAGAAGTGGCCATAGAAAAGAAGCGGAAGACCGTGAAGCTTGAACACATCAGAATTGCCACCAAAAGGCACAGGCCGACAAGTGAGTTCCTCCTCGATTCGCTTCCTACACCACCTGAGCCCTCAAAAAATCAATCGTCCAATCTGAACAAAACTCGCTCTGTGGCTGATAAAGTGCCTGAAGCTCGCACTCGTAAAATTGATGATTTCTTCAGCAAGCCATCAAATGAGGCTACAGTTCAGATCAATGAGTCATAA 423 47.75 MAEEESRQTIGPEFPTGRVKRIMKLDKDINKVNSEALFLVTCSTELFVRFLAEKSAEVAIEKKRKTVKLEHIRIATKRHRPTSEFLLDSLPTPPEPSKNQSSNLNKTRSVADKVPEARTRKIDDFFSKPSNEATVQINES 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7435453 7435919 + Conep12aG0084000.1 Cone12ag0815 449659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0815 140 Gene3D Histone, subunit A 1 92 IPR009072 GO:0046982(InterPro)
Cone12ag0815 140 MobiDBLite consensus disorder prediction 93 109 - -
Cone12ag0815 140 MobiDBLite consensus disorder prediction 83 125 - -
Cone12ag0815 140 MobiDBLite consensus disorder prediction 111 125 - -
Cone12ag0815 140 SUPERFAMILY Histone-fold 8 107 IPR009072 GO:0046982(InterPro)
Cone12ag0815 140 FunFam Nuclear factor Y, subunit C13 1 91 - -
Cone12ag0815 140 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 75 IPR003958 -
Cone12ag0815 140 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 12 116 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0815 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0815 Cone-Chr12:7435453 Cone8ag0749 Cone-Chr8:7561785 1.71E-46 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone19ag0213 . 36 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.5 1.6e-88 323.2
Cone13ag0228 . 36 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.0 2.7e-88 322.4
Cone10ag1432 . 72 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.1 9.8e-54 207.6
Cone3ag1500 . 72 232 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.2 3.7e-53 205.7
Cone3ag0756 . 71 239 CCAAT-HAP5 Transcription Factor Family AT3G48590 62.9 1.1e-49 194.1
Cone1ag1761 . 62 233 CCAAT-HAP5 Transcription Factor Family AT3G48590 63.0 3.3e-49 192.6
Cone10ag0745 . 79 206 CCAAT-HAP5 Transcription Factor Family AT3G48590 71.9 1.5e-46 183.7
Cone1ag1761 . 6 239 CCAAT-HAP5 Transcription Factor Family AT1G08970 56.2 4.1e-52 202.2
Cone10ag0745 . 1 174 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.0 2.6e-51 199.5
Cone3ag1500 . 22 170 CCAAT-HAP5 Transcription Factor Family AT1G08970 71.1 2.5e-49 193.0
Cone10ag1432 . 22 170 CCAAT-HAP5 Transcription Factor Family AT1G08970 71.8 2.5e-49 193.0
Cone3ag0756 . 1 166 CCAAT-HAP5 Transcription Factor Family AT1G08970 66.3 2.7e-48 189.5
Cone13ag0228 . 36 134 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.9e-42 169.5
Cone19ag0213 . 36 134 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.9e-42 169.5
Cone1ag1761 . 6 244 CCAAT-HAP5 Transcription Factor Family AT1G54830 58.2 5.0e-60 228.4
Cone3ag0756 . 70 246 CCAAT-HAP5 Transcription Factor Family AT1G54830 64.4 6.3e-55 211.5
Cone10ag0745 . 1 211 CCAAT-HAP5 Transcription Factor Family AT1G54830 57.8 1.8e-54 209.9
Cone10ag1432 . 22 217 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.7 4.1e-54 208.8
Cone3ag1500 . 22 218 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.4 9.1e-54 207.6
Cone13ag0228 . 36 194 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.5e-51 199.5
Cone19ag0213 . 36 194 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.5e-51 199.5
Cone13ag0228 . 41 193 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.5 4.2e-37 152.1
Cone19ag0213 . 41 193 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.5 4.2e-37 152.1
Cone19ag0213 . 36 220 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.4 6.5e-80 294.7
Cone13ag0228 . 36 220 CCAAT-HAP5 Transcription Factor Family AT5G63470 79.9 1.1e-79 293.9
Cone3ag1500 . 72 232 CCAAT-HAP5 Transcription Factor Family AT5G63470 65.4 9.8e-52 201.1
Cone10ag1432 . 72 220 CCAAT-HAP5 Transcription Factor Family AT5G63470 66.9 2.4e-50 196.4
Cone3ag0756 . 71 239 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.2 1.1e-47 187.6
Cone1ag1761 . 62 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 59.5 3.3e-47 186.0
Cone10ag0745 . 79 180 CCAAT-HAP5 Transcription Factor Family AT5G63470 84.3 6.8e-45 178.3
Cone10ag1432 . 33 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.2 6.8e-64 241.1
Cone3ag1500 . 47 201 CCAAT-HAP5 Transcription Factor Family AT1G56170 85.9 4.4e-63 238.4
Cone10ag0745 . 50 208 CCAAT-HAP5 Transcription Factor Family AT1G56170 72.0 5.1e-51 198.4
Cone3ag0756 . 71 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.6 4.3e-50 195.3
Cone13ag0228 . 36 159 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.6e-50 194.9
Cone19ag0213 . 36 159 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.6e-50 194.9
Cone1ag1761 . 62 178 CCAAT-HAP5 Transcription Factor Family AT1G56170 80.3 1.2e-49 193.7
Cone1ag0827 . 1 299 CCAAT-HAP5 Transcription Factor Family AT3G12480 52.3 7.2e-62 235.0
Cone5ag0992 . 1 297 CCAAT-HAP5 Transcription Factor Family AT3G12480 53.6 6.1e-61 231.9
Cone12ag0815 . 4 128 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.8 1.9e-38 156.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009175 3 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 0 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44483 PF00270 DEAD 2.50E-11 CL0023 Cone TF