Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0821 ATGGGTAATTCTCGGCCGAACAAACTCTTACGTAGAACACAGAATCTTCTAACCTGGTTGAGAAATAGCACCGTTCCTCATGGCAGAAGAATCTTCCATAGAGATGTTGAGCAACAGCAAGAGTTTCGATACGCAACCGCTCGTTGTCTCTCTTCGTACTATAGTGTCTTTGTCGCCCGCCTCGCTATTATGGTCATGCTAGCCATTCTAATTGGGTTACTAACCATATTAACATGGCATTTCACGAAGCGTTACACCGCACAGTCGCTAAACAGCTTAGCGTACGACCTCAGGTACGAGATTCTCCAACGTCCGATCCTACGGATGTGGAACATCTTGAATTCCACCTCGGAAATAACAACCTCGCAAGGGAAGCTTTCTGAGTACGTCATAAGACGGTATAGCAAGCCGACTAATCAAGCCGAACAAGTCGAGTTGTACGAAGCAATGAAGGACGTAACATGGGCCCTGTTCGCTAGCCGTAAAGCTCTCAACGCGATAACTGTAAACTTCCGAAATGGTTTCGTCCAAGCATTCCATAGAGATCATAGAAGCAACAACACATTCTACATCTACTCGGACCTCTCCAACTACTCCATCAACTCAGGCGATCAATCTTACAATCAAGGGTGGAAAGATCTACCGATCCACGGTAACATCTCTGCCATCTGGTACCGGGAACCACTTGACCCAATTACCGGATTGAAGATAGGAAAACCGATGCAGATCCCGCCCGAGGATCTAATCAACATACCGGGGCTAACTCAAGTACCAGATGGAGTAGCCTCTTGGCACGTGACGGTTAGCAAGTACATAGACTCTCCCTTACTTTCGGCCACTCTTCCGGTTTCAGACCCAGCCAATGAGAGCATAGTAGCTGTTGTAGGGGTCACTACGGCGCTTTATAGCGTAGGGCAGTTAATGAAAGAGCTCGTAGAGTTTCATTCGGGACATATTTATTTGACATCTCAAGAAGGGTACCTGCTTGCTACTTCTGGTAATGCCCCGCTTTTGACTAATAATGCCACGGTTGGCCCAAAGCTCATGATGGCCATTGAATCCAAGGACGATATAATACGGATGGGAGCTGATTGGTTGAAGAGAAGTTATGGAAAAAAGTATCCTCCTAGTCAGGAAGTTCATGCTGAAAATGTTCGACTTGGAAACGAACAATATTATATTGACTCGTTTTCCCTCAATTTAAAGAGGCTTCCTCTTGTGGGGGTTATTATAATTCCGAGGAAGTATATTCTTGGAAAGGTCGATGAGCGAGCTTTTAAGACGTTGGTGATACTAATTTCCGCGTCGTTATGTATATTAGTGATCGGATGTGTTTGCATTTTGATCTTGACTAATGGAGTGTCTAAGGAAATGAAACTGAGAGCTGAATTGATAAGCCACCTTGATGCAAGAAGAAGAGCAGAGGCTTCTAGTAACTACAAGAGCCAATTTCTAGCGAATATGAGCCATGAATTGAGAACACCAATGGCAGCCGTTATAGGATTACTCGATATTCTGATATGCGATGATTGCCTTACAAACGAACAGTACTCTACGGTTACTCAAATCCGGAAATGTTCTACGGCTCTTCTCAGACTTCTTAACAACATATTGGATCTAAGCAAGGTAGAATCTGGGAAACTGGTTTTGGAAGAAGCTGAGTTTGATTTGGGACTGGAGCTTGAAGGGCTTGTCGATATGTTCTCTGTCCAGTGCATCAACCACAATGTAGAGACTGTTCTAGACCTCTCAGATGAGATTCCGAAACTAGTTCGAGGAGACTCTGCTAGAGTCGTGCAAATATTCGCAAATTTAATCAGCAATTCTATCAAGTTCACAACATCGGGTCATGTTCTTGTTCGAGGATGGTGTGAGAACCCGAATAGTTTCAACAATGGTGAGAAGAGATCATCGAGGTTTGGAAATCAGACGAAGATGATTAATACAAGGAAGAACAGTAGGAAAGAAAACAAGATGACTCTCTGGTTTGAAGTTGATGACACTGGGTGTGGGATTGATCCAACCAAATGGGAGTCTGTCTTTGAAAGCTTTGAGCAGGCCGATCCCTCTACAACCCGAACACATGGAGGCACTGGTCTAGGACTATGCATTGTTCGGACTCTGGTGAACAAGATGGGTGGAGAGATCAAAGTCGTGAAGAAAAATGGTCCGGGCACACTAATGCGCCTATATCTTGTTCTTAGTACTCCCTTAGATTCAATAGAACAACACTTTCAAACAGATTTTGCAAAGGATAACATAGTGTTACTTCTCGCTATCCGTGGAAAAACGAGCAGATTCCTCATGTCAAAGTGGCTTAGGAAAATCGGACTACTTACTTTAGAAGCTTCTGAATGGAATGAACTGACACAAATTCTTCAAGAACTTTATCGGGAAAAAACTAATTCGGTCCATACTAATGGATTAATGGATGGACAGGATTATTCACTGAGTGAACATATAAGAGACGAGTTAGTTAAGATTCAAGACAACATGAGAAACAGAATCCTCGTTCCGGTTGTTGATATAGGGCTACTAGACTTAAGCACCGATATATGGAAAGAACAACTAAACTTTCTTGGAAAATATTCCCAAAAGGCCAAGTTTGCATGGATGTTAAACCACGACACATCCAATTCCGTAAAGACTAAGCTCCGGCAAAAAGGGCATGATTTGATGGTGAACAAGCCGCTTTACAAGACGAAGATGGTGCATATTCTAGAAGCTATTGTAAAGGAGAAAAATGCAGAGAAGAGAAGTTCAAAAGAAAGGGATTTTGTGGAATGTCTTGAGATTGATTCTAGTCATGATTTTGATCAGGCTAGTTCGGATTCCGATATGTCTATTGAGTTAAGTCATGTATGTGCTTCAAAGGGAAGTCCAAATGAGTCATCTTCTTCTCTTAAAGGCTTACACATTCTTCTTGCAGAAGATACTCCGGTCTTACAAAGGGTTGCTACCATTATGCTTGAAAAAATGGGAGCTAAGGTTATTGCGGCAGGGGACGGATTACAAGCCTTAGATGCTCTAGAATCTCTTTTCAAGGAGAGGAAGAGAGAATCTCGAAACGAAATTTCCGAGTACCCTTCGTTCGATTTGGTGTTAATGGACTGTCAAATGCCAAGGATGGATGGTTATGAAGCGACAAAGGCGATCAGGAAAACAGAAGCTGGGACAGGGTTTCACATTCCGATCGTTGCATTGACGGCCCATGCCATGTCATCGGATGAAGCCAAGTGCTTTGAGGTGGGAATGGATGCTTATCTTACTAAGCCTATTGATTATAAGTTGATGGTATCTACCATTCTTTCACTCACTAGGAGAAGGGTATAA 3333 42.99 MGNSRPNKLLRRTQNLLTWLRNSTVPHGRRIFHRDVEQQQEFRYATARCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKRYTAQSLNSLAYDLRYEILQRPILRMWNILNSTSEITTSQGKLSEYVIRRYSKPTNQAEQVELYEAMKDVTWALFASRKALNAITVNFRNGFVQAFHRDHRSNNTFYIYSDLSNYSINSGDQSYNQGWKDLPIHGNISAIWYREPLDPITGLKIGKPMQIPPEDLINIPGLTQVPDGVASWHVTVSKYIDSPLLSATLPVSDPANESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSGNAPLLTNNATVGPKLMMAIESKDDIIRMGADWLKRSYGKKYPPSQEVHAENVRLGNEQYYIDSFSLNLKRLPLVGVIIIPRKYILGKVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILICDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEEAEFDLGLELEGLVDMFSVQCINHNVETVLDLSDEIPKLVRGDSARVVQIFANLISNSIKFTTSGHVLVRGWCENPNSFNNGEKRSSRFGNQTKMINTRKNSRKENKMTLWFEVDDTGCGIDPTKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLVLSTPLDSIEQHFQTDFAKDNIVLLLAIRGKTSRFLMSKWLRKIGLLTLEASEWNELTQILQELYREKTNSVHTNGLMDGQDYSLSEHIRDELVKIQDNMRNRILVPVVDIGLLDLSTDIWKEQLNFLGKYSQKAKFAWMLNHDTSNSVKTKLRQKGHDLMVNKPLYKTKMVHILEAIVKEKNAEKRSSKERDFVECLEIDSSHDFDQASSDSDMSIELSHVCASKGSPNESSSSLKGLHILLAEDTPVLQRVATIMLEKMGAKVIAAGDGLQALDALESLFKERKRESRNEISEYPSFDLVLMDCQMPRMDGYEATKAIRKTEAGTGFHIPIVALTAHAMSSDEAKCFEVGMDAYLTKPIDYKLMVSTILSLTRRRV 1110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7476353 7480803 + Conep12aG0084600.1 Cone12ag0821 449665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0821 1110 Gene3D - 952 1107 - -
Cone12ag0821 1110 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 593 733 IPR003594 -
Cone12ag0821 1110 Gene3D - 468 547 - -
Cone12ag0821 1110 CDD HisKA 481 542 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone12ag0821 1110 SUPERFAMILY CheY-like 969 1108 IPR011006 -
Cone12ag0821 1110 PRINTS Bacterial sensor protein C-terminal signature 661 675 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone12ag0821 1110 PRINTS Bacterial sensor protein C-terminal signature 679 689 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone12ag0821 1110 PRINTS Bacterial sensor protein C-terminal signature 696 714 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone12ag0821 1110 FunFam Histidine kinase 1-like protein 468 547 - -
Cone12ag0821 1110 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 535 732 IPR036890 -
Cone12ag0821 1110 PANTHER TWO-COMPONENT HISTIDINE KINASE 51 741 IPR050736 -
Cone12ag0821 1110 SMART HKATPase_4 593 736 IPR003594 -
Cone12ag0821 1110 Pfam Response regulator receiver domain 973 1101 IPR001789 GO:0000160(InterPro)
Cone12ag0821 1110 ProSiteProfiles Histidine kinase domain profile. 487 736 IPR005467 -
Cone12ag0821 1110 Pfam His Kinase A (phospho-acceptor) domain 481 546 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone12ag0821 1110 Gene3D - 548 737 IPR036890 -
Cone12ag0821 1110 SMART REC_2 971 1102 IPR001789 GO:0000160(InterPro)
Cone12ag0821 1110 SMART HisKA_10 480 546 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone12ag0821 1110 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 468 547 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone12ag0821 1110 ProSiteProfiles Response regulatory domain profile. 972 1106 IPR001789 GO:0000160(InterPro)
Cone12ag0821 1110 CDD REC_hyHK_CKI1_RcsC-like 973 1102 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0821 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0821 Cone-Chr12:7476353 Cone9ag0376 Cone-Chr9:1690632 2.23E-44 dispersed
Cone17ag0419 Cone-Chr17:1969717 Cone12ag0821 Cone-Chr12:7476353 2.31E-57 transposed
Cone12ag0821 Cone-Chr12:7476353 Cone8ag0858 Cone-Chr8:8501919 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1138 Blo04g00878 Blo16g00087 . . Bpe15g00478 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0858 Cone12ag0821 . . . . . . . . . . . . Bma03g00954 . . . . Cma16g01243 . . . . . . . . . . . . . . . . . . . Lsi07g01094 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag0858 . 19 1108 Histidine Kinase Gene Family AT2G17820 64.8 0.0e+00 1384.4
Cone12ag0821 . 1 1107 Histidine Kinase Gene Family AT2G17820 63.1 0.0e+00 1382.5
Cone6ag0342 . 23 1008 Histidine Kinase Gene Family AT2G01830 71.5 0.0e+00 1354.0
Cone9ag0376 . 23 1002 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1348.6
Cone12ag1329 . 264 1193 Histidine Kinase Gene Family AT2G01830 54.7 4.3e-282 968.4
Cone15ag0619 . 88 1043 Histidine Kinase Gene Family AT2G01830 54.4 2.8e-281 965.7
Cone14ag0613 . 88 1042 Histidine Kinase Gene Family AT2G01830 54.2 6.2e-281 964.5
Cone8ag1386 . 265 1191 Histidine Kinase Gene Family AT2G01830 54.3 9.8e-279 957.2
Cone4ag1716 . 1 1005 Histidine Kinase Gene Family AT5G10720 56.9 1.7e-290 996.1
Cone7ag1634 . 1 1007 Histidine Kinase Gene Family AT5G10720 56.1 1.4e-284 976.5
Cone13ag0806 . 1 1121 Histidine Kinase Gene Family AT1G09570 77.6 0.0e+00 1767.7
Cone19ag0812 . 1 1108 Histidine Kinase Gene Family AT1G09570 76.8 0.0e+00 1748.4
Cone12ag1314 . 21 1122 Histidine Kinase Gene Family AT1G09570 57.3 0.0e+00 1277.3
Cone8ag1368 . 35 1132 Histidine Kinase Gene Family AT1G09570 57.0 0.0e+00 1267.3
Cone14ag0717 . 31 1119 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1177.9
Cone15ag0729 . 31 951 Histidine Kinase Gene Family AT1G09570 56.0 1.7e-305 1046.2
Cone14ag0717 . 5 1060 Histidine Kinase Gene Family AT2G18790 79.1 0.0e+00 1662.5
Cone15ag0729 . 10 966 Histidine Kinase Gene Family AT2G18790 79.0 0.0e+00 1515.7
Cone8ag1368 . 45 1072 Histidine Kinase Gene Family AT2G18790 54.6 0.0e+00 1113.2
Cone12ag1314 . 33 1062 Histidine Kinase Gene Family AT2G18790 55.0 0.0e+00 1112.1
Cone13ag0806 . 20 1056 Histidine Kinase Gene Family AT2G18790 52.3 0.0e+00 1076.6
Cone19ag0812 . 20 1043 Histidine Kinase Gene Family AT2G18790 51.6 7.2e-312 1067.4
Cone12ag1314 . 19 1126 Histidine Kinase Gene Family AT5G35840 63.0 0.0e+00 1410.6
Cone8ag1368 . 29 1136 Histidine Kinase Gene Family AT5G35840 62.9 0.0e+00 1409.0
Cone14ag0717 . 13 1121 Histidine Kinase Gene Family AT5G35840 52.0 0.0e+00 1127.5
Cone13ag0806 . 7 1115 Histidine Kinase Gene Family AT5G35840 50.9 0.0e+00 1106.3
Cone19ag0812 . 7 1102 Histidine Kinase Gene Family AT5G35840 51.2 0.0e+00 1103.2
Cone15ag0729 . 13 951 Histidine Kinase Gene Family AT5G35840 54.3 2.7e-295 1012.3
Cone14ag0717 . 8 1121 Histidine Kinase Gene Family AT4G16250 76.0 0.0e+00 1692.6
Cone15ag0729 . 8 971 Histidine Kinase Gene Family AT4G16250 75.8 0.0e+00 1467.6
Cone12ag1314 . 33 1125 Histidine Kinase Gene Family AT4G16250 53.8 0.0e+00 1151.7
Cone8ag1368 . 45 1135 Histidine Kinase Gene Family AT4G16250 53.5 0.0e+00 1150.6
Cone13ag0806 . 19 1116 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1113.6
Cone19ag0812 . 19 1103 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1107.4
Cone14ag0717 . 12 1119 Histidine Kinase Gene Family AT4G18130 58.7 0.0e+00 1272.7
Cone15ag0729 . 12 949 Histidine Kinase Gene Family AT4G18130 60.8 0.0e+00 1108.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44484 PF00106 adh_short 1.20E-25 CL0063 Cone TR