Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0821 ATGGGTAATTCTCGGCCGAACAAACTCTTACGTAGAACACAGAATCTTCTAACCTGGTTGAGAAATAGCACCGTTCCTCATGGCAGAAGAATCTTCCATAGAGATGTTGAGCAACAGCAAGAGTTTCGATACGCAACCGCTCGTTGTCTCTCTTCGTACTATAGTGTCTTTGTCGCCCGCCTCGCTATTATGGTCATGCTAGCCATTCTAATTGGGTTACTAACCATATTAACATGGCATTTCACGAAGCGTTACACCGCACAGTCGCTAAACAGCTTAGCGTACGACCTCAGGTACGAGATTCTCCAACGTCCGATCCTACGGATGTGGAACATCTTGAATTCCACCTCGGAAATAACAACCTCGCAAGGGAAGCTTTCTGAGTACGTCATAAGACGGTATAGCAAGCCGACTAATCAAGCCGAACAAGTCGAGTTGTACGAAGCAATGAAGGACGTAACATGGGCCCTGTTCGCTAGCCGTAAAGCTCTCAACGCGATAACTGTAAACTTCCGAAATGGTTTCGTCCAAGCATTCCATAGAGATCATAGAAGCAACAACACATTCTACATCTACTCGGACCTCTCCAACTACTCCATCAACTCAGGCGATCAATCTTACAATCAAGGGTGGAAAGATCTACCGATCCACGGTAACATCTCTGCCATCTGGTACCGGGAACCACTTGACCCAATTACCGGATTGAAGATAGGAAAACCGATGCAGATCCCGCCCGAGGATCTAATCAACATACCGGGGCTAACTCAAGTACCAGATGGAGTAGCCTCTTGGCACGTGACGGTTAGCAAGTACATAGACTCTCCCTTACTTTCGGCCACTCTTCCGGTTTCAGACCCAGCCAATGAGAGCATAGTAGCTGTTGTAGGGGTCACTACGGCGCTTTATAGCGTAGGGCAGTTAATGAAAGAGCTCGTAGAGTTTCATTCGGGACATATTTATTTGACATCTCAAGAAGGGTACCTGCTTGCTACTTCTGGTAATGCCCCGCTTTTGACTAATAATGCCACGGTTGGCCCAAAGCTCATGATGGCCATTGAATCCAAGGACGATATAATACGGATGGGAGCTGATTGGTTGAAGAGAAGTTATGGAAAAAAGTATCCTCCTAGTCAGGAAGTTCATGCTGAAAATGTTCGACTTGGAAACGAACAATATTATATTGACTCGTTTTCCCTCAATTTAAAGAGGCTTCCTCTTGTGGGGGTTATTATAATTCCGAGGAAGTATATTCTTGGAAAGGTCGATGAGCGAGCTTTTAAGACGTTGGTGATACTAATTTCCGCGTCGTTATGTATATTAGTGATCGGATGTGTTTGCATTTTGATCTTGACTAATGGAGTGTCTAAGGAAATGAAACTGAGAGCTGAATTGATAAGCCACCTTGATGCAAGAAGAAGAGCAGAGGCTTCTAGTAACTACAAGAGCCAATTTCTAGCGAATATGAGCCATGAATTGAGAACACCAATGGCAGCCGTTATAGGATTACTCGATATTCTGATATGCGATGATTGCCTTACAAACGAACAGTACTCTACGGTTACTCAAATCCGGAAATGTTCTACGGCTCTTCTCAGACTTCTTAACAACATATTGGATCTAAGCAAGGTAGAATCTGGGAAACTGGTTTTGGAAGAAGCTGAGTTTGATTTGGGACTGGAGCTTGAAGGGCTTGTCGATATGTTCTCTGTCCAGTGCATCAACCACAATGTAGAGACTGTTCTAGACCTCTCAGATGAGATTCCGAAACTAGTTCGAGGAGACTCTGCTAGAGTCGTGCAAATATTCGCAAATTTAATCAGCAATTCTATCAAGTTCACAACATCGGGTCATGTTCTTGTTCGAGGATGGTGTGAGAACCCGAATAGTTTCAACAATGGTGAGAAGAGATCATCGAGGTTTGGAAATCAGACGAAGATGATTAATACAAGGAAGAACAGTAGGAAAGAAAACAAGATGACTCTCTGGTTTGAAGTTGATGACACTGGGTGTGGGATTGATCCAACCAAATGGGAGTCTGTCTTTGAAAGCTTTGAGCAGGCCGATCCCTCTACAACCCGAACACATGGAGGCACTGGTCTAGGACTATGCATTGTTCGGACTCTGGTGAACAAGATGGGTGGAGAGATCAAAGTCGTGAAGAAAAATGGTCCGGGCACACTAATGCGCCTATATCTTGTTCTTAGTACTCCCTTAGATTCAATAGAACAACACTTTCAAACAGATTTTGCAAAGGATAACATAGTGTTACTTCTCGCTATCCGTGGAAAAACGAGCAGATTCCTCATGTCAAAGTGGCTTAGGAAAATCGGACTACTTACTTTAGAAGCTTCTGAATGGAATGAACTGACACAAATTCTTCAAGAACTTTATCGGGAAAAAACTAATTCGGTCCATACTAATGGATTAATGGATGGACAGGATTATTCACTGAGTGAACATATAAGAGACGAGTTAGTTAAGATTCAAGACAACATGAGAAACAGAATCCTCGTTCCGGTTGTTGATATAGGGCTACTAGACTTAAGCACCGATATATGGAAAGAACAACTAAACTTTCTTGGAAAATATTCCCAAAAGGCCAAGTTTGCATGGATGTTAAACCACGACACATCCAATTCCGTAAAGACTAAGCTCCGGCAAAAAGGGCATGATTTGATGGTGAACAAGCCGCTTTACAAGACGAAGATGGTGCATATTCTAGAAGCTATTGTAAAGGAGAAAAATGCAGAGAAGAGAAGTTCAAAAGAAAGGGATTTTGTGGAATGTCTTGAGATTGATTCTAGTCATGATTTTGATCAGGCTAGTTCGGATTCCGATATGTCTATTGAGTTAAGTCATGTATGTGCTTCAAAGGGAAGTCCAAATGAGTCATCTTCTTCTCTTAAAGGCTTACACATTCTTCTTGCAGAAGATACTCCGGTCTTACAAAGGGTTGCTACCATTATGCTTGAAAAAATGGGAGCTAAGGTTATTGCGGCAGGGGACGGATTACAAGCCTTAGATGCTCTAGAATCTCTTTTCAAGGAGAGGAAGAGAGAATCTCGAAACGAAATTTCCGAGTACCCTTCGTTCGATTTGGTGTTAATGGACTGTCAAATGCCAAGGATGGATGGTTATGAAGCGACAAAGGCGATCAGGAAAACAGAAGCTGGGACAGGGTTTCACATTCCGATCGTTGCATTGACGGCCCATGCCATGTCATCGGATGAAGCCAAGTGCTTTGAGGTGGGAATGGATGCTTATCTTACTAAGCCTATTGATTATAAGTTGATGGTATCTACCATTCTTTCACTCACTAGGAGAAGGGTATAA 3333 42.99 MGNSRPNKLLRRTQNLLTWLRNSTVPHGRRIFHRDVEQQQEFRYATARCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKRYTAQSLNSLAYDLRYEILQRPILRMWNILNSTSEITTSQGKLSEYVIRRYSKPTNQAEQVELYEAMKDVTWALFASRKALNAITVNFRNGFVQAFHRDHRSNNTFYIYSDLSNYSINSGDQSYNQGWKDLPIHGNISAIWYREPLDPITGLKIGKPMQIPPEDLINIPGLTQVPDGVASWHVTVSKYIDSPLLSATLPVSDPANESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSGNAPLLTNNATVGPKLMMAIESKDDIIRMGADWLKRSYGKKYPPSQEVHAENVRLGNEQYYIDSFSLNLKRLPLVGVIIIPRKYILGKVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILICDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEEAEFDLGLELEGLVDMFSVQCINHNVETVLDLSDEIPKLVRGDSARVVQIFANLISNSIKFTTSGHVLVRGWCENPNSFNNGEKRSSRFGNQTKMINTRKNSRKENKMTLWFEVDDTGCGIDPTKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLVLSTPLDSIEQHFQTDFAKDNIVLLLAIRGKTSRFLMSKWLRKIGLLTLEASEWNELTQILQELYREKTNSVHTNGLMDGQDYSLSEHIRDELVKIQDNMRNRILVPVVDIGLLDLSTDIWKEQLNFLGKYSQKAKFAWMLNHDTSNSVKTKLRQKGHDLMVNKPLYKTKMVHILEAIVKEKNAEKRSSKERDFVECLEIDSSHDFDQASSDSDMSIELSHVCASKGSPNESSSSLKGLHILLAEDTPVLQRVATIMLEKMGAKVIAAGDGLQALDALESLFKERKRESRNEISEYPSFDLVLMDCQMPRMDGYEATKAIRKTEAGTGFHIPIVALTAHAMSSDEAKCFEVGMDAYLTKPIDYKLMVSTILSLTRRRV 1110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7476353 7480803 + Conep12aG0084600.1 Cone12ag0821 449665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0821 1110 Gene3D - 952 1107 - -
Cone12ag0821 1110 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 593 733 IPR003594 -
Cone12ag0821 1110 Gene3D - 468 547 - -
Cone12ag0821 1110 CDD HisKA 481 542 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone12ag0821 1110 SUPERFAMILY CheY-like 969 1108 IPR011006 -
Cone12ag0821 1110 PRINTS Bacterial sensor protein C-terminal signature 661 675 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone12ag0821 1110 PRINTS Bacterial sensor protein C-terminal signature 679 689 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone12ag0821 1110 PRINTS Bacterial sensor protein C-terminal signature 696 714 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone12ag0821 1110 FunFam Histidine kinase 1-like protein 468 547 - -
Cone12ag0821 1110 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 535 732 IPR036890 -
Cone12ag0821 1110 PANTHER TWO-COMPONENT HISTIDINE KINASE 51 741 IPR050736 -
Cone12ag0821 1110 SMART HKATPase_4 593 736 IPR003594 -
Cone12ag0821 1110 Pfam Response regulator receiver domain 973 1101 IPR001789 GO:0000160(InterPro)
Cone12ag0821 1110 ProSiteProfiles Histidine kinase domain profile. 487 736 IPR005467 -
Cone12ag0821 1110 Pfam His Kinase A (phospho-acceptor) domain 481 546 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone12ag0821 1110 Gene3D - 548 737 IPR036890 -
Cone12ag0821 1110 SMART REC_2 971 1102 IPR001789 GO:0000160(InterPro)
Cone12ag0821 1110 SMART HisKA_10 480 546 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone12ag0821 1110 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 468 547 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone12ag0821 1110 ProSiteProfiles Response regulatory domain profile. 972 1106 IPR001789 GO:0000160(InterPro)
Cone12ag0821 1110 CDD REC_hyHK_CKI1_RcsC-like 973 1102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0821 Cone-Chr12:7476353 Cone9ag0376 Cone-Chr9:1690632 2.23E-44 dispersed
Cone17ag0419 Cone-Chr17:1969717 Cone12ag0821 Cone-Chr12:7476353 2.31E-57 transposed
Cone12ag0821 Cone-Chr12:7476353 Cone8ag0858 Cone-Chr8:8501919 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44484 PF00106 adh_short 1.20E-25 CL0063 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0821 - - - 0.0