Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0824 ATGGGTTGCTGTTACTCTAGAATAGAGAGGGAAGAGACGGTTTCAAGATGCAAAGCAAGGAAGAGCTACATGAAACAGTTAGTGAAAGCAAGACAGTCTCTCTGTGCCACTCATAGCTTATACCTTCGTTCTCTACGCTCTACTGGCTCTGCTCTGCTCCAATTCACCAATGTAGAAACCAATCTCCACCTCCACCACCACCGCCGTCGCAGCGGCGGTGGCGGCCAGGTGGGCATCCCTTCTCCATCACCAAAAACCCCACTTCCACCGCCACCTCCTCCAATGAGCCCCAGCTCTTCCACCACATGGACCTCTGTTTCCACCTCCTCTGTTCTTCCACCTCCACCGTCGCCGCCTCCTCCCCCGCCGGCGGCTTCTACAACGTGGGATTTCTGGGACCCATTTATGCCGGCTGCATCTCGTTCGGTTACGGAGGAGGAATGGGAAGCCGCCACCTCCGCCGCCGCATCAGAAGTTATGGTTACTAAAACAGGGGCGGTAAGCTCTGCTTCTGCTTCTATAGCTCCACCTTCTATGGTTAGTGGGTTTTCTAAGAACACATCAAGCACTGAGCTCGCAGTGGTGGTTTCAAGGAATGCTAAAGATCTAGTTGAAATAATCAAAGAGCTTGATGAGTACTTTCTTAAAGCTGCTGAATCTGGGGCCCACCTCTCCTCGCTTTTAGAGGTTCCAAATTCTAACTTCTCTTCTCAAAACAGAGGAGCTCGTCAAGTATACAATTATGGGTTGGGTTTGAATCCATCAAATTGCTCATGGGGAGGTTCAAGTCCAAAATCTAATGTATTTGTGTCAAGTAATGTGAGCAATAGCCATTGTTCTACTGTGGAGAGGCTTTATGCTTGGGAGAAGAAACTATATCAAGAGGTCAAGGGTGCAGAGACAATAAAGATAGAGCATGAGAAGAGAGTGACACAATTTAGGAAGCTAGAGATGAAAGGAGATGACTACTTGAAAACAGAGAAAATGAAGAAAGAGGTAGAAAAGTTGGAGTCACAAATGATGGTTGCTGTTCAAGCCATTGAGTCTACTTCTTCTGAAATCATAAAGTTAAGGGAGATTGACCTCTACCCTCAACTCCTTGACCTTCTCAAAGGATTGATGTGCATGTGGAGAGCAATGTATGAGTGCCATCAAGTTCAAACCCACATAGTCGAGCAGCTAAAGTACCTCAACACCATCCCCTCCACGATGCCCACTTCCGAAATCCACCGCCAATCAACCCTCCAGCTCGAGCTAGAGGTCCAACAGTGGCACCTTTCCTTTTGCAACTTAGTCAAGTCCCAACAAGACTACATCCAGTCTCTAACCGGCTGGCTTCGGCTCAGTCTCTTCCAGTTCACCCGAAACCCATTAGCCAAAACCGGCCAAGATTCTAGAATCTACTCCCTTTGTGAAGATTGGCATCAAGCCGTTGATAGAATCCCGGACAAAGTAGCATCTGAAGGGATAAAAAGCTTCTTGGCAGCAATACATGCTATAGTTGTGCAACAGGCAGAAGAGCATAGGCAGAAGAAAAGGGCAGAATCAGCATTTAAGGAGCTTGATAAGAGGGCTACGGAGCTTAGATCGTTGCAGTGTAAACATGGGCCATATTCACTCGGGCCTGAAATTTCCGGGGCGATAAGAAGGAAGGACCCGATTATGGAGAAGAGAGTGAAAGTTGAGATGCTGAGGGCAAAAGCACAGGAGGAGAAGGTCAAGCATGAAAAGACGGTTAGTGTGACTAGAGCTATGACAATGAATAACTTGCAGATGGGTTTTCCGAATGTTTTTCAAGCCATGGTCGGGTTTTCAAGCGTTTGCATGCAAGCATATGAGTCGGTTTTTAATCAAGCTAAAATTTCTTATGATGAGGTTGATGTGAAGAGGCTGATGCCATGA 1902 47.11 MGCCYSRIEREETVSRCKARKSYMKQLVKARQSLCATHSLYLRSLRSTGSALLQFTNVETNLHLHHHRRRSGGGGQVGIPSPSPKTPLPPPPPPMSPSSSTTWTSVSTSSVLPPPPSPPPPPPAASTTWDFWDPFMPAASRSVTEEEWEAATSAAASEVMVTKTGAVSSASASIAPPSMVSGFSKNTSSTELAVVVSRNAKDLVEIIKELDEYFLKAAESGAHLSSLLEVPNSNFSSQNRGARQVYNYGLGLNPSNCSWGGSSPKSNVFVSSNVSNSHCSTVERLYAWEKKLYQEVKGAETIKIEHEKRVTQFRKLEMKGDDYLKTEKMKKEVEKLESQMMVAVQAIESTSSEIIKLREIDLYPQLLDLLKGLMCMWRAMYECHQVQTHIVEQLKYLNTIPSTMPTSEIHRQSTLQLELEVQQWHLSFCNLVKSQQDYIQSLTGWLRLSLFQFTRNPLAKTGQDSRIYSLCEDWHQAVDRIPDKVASEGIKSFLAAIHAIVVQQAEEHRQKKRAESAFKELDKRATELRSLQCKHGPYSLGPEISGAIRRKDPIMEKRVKVEMLRAKAQEEKVKHEKTVSVTRAMTMNNLQMGFPNVFQAMVGFSSVCMQAYESVFNQAKISYDEVDVKRLMP 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7490928 7493555 + Conep12aG0084900.1 Cone12ag0824 449668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0824 633 PANTHER UNCHARACTERIZED 1 620 - -
Cone12ag0824 633 MobiDBLite consensus disorder prediction 64 130 - -
Cone12ag0824 633 Coils Coil 326 346 - -
Cone12ag0824 633 Coils Coil 511 531 - -
Cone12ag0824 633 Pfam Protein of unknown function (DUF630) 1 58 IPR006868 -
Cone12ag0824 633 MobiDBLite consensus disorder prediction 82 98 - -
Cone12ag0824 633 MobiDBLite consensus disorder prediction 111 127 - -
Cone12ag0824 633 Pfam Protein of unknown function (DUF632) 203 498 IPR006867 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0824 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0824 Cone-Chr12:7490928 Cone14ag0491 Cone-Chr14:2410794 2.87E-83 dispersed
Cone12ag0824 Cone-Chr12:7490928 Cone8ag0861 Cone-Chr8:8516559 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1147 . . . . . . . . . . Cma03g00671 Cma07g00413 Car03g00617 Car07g00363 . Cpe19g00870 Cpe10g00677 Bhi03g00838 . . . . . . Cla01g01993 Cam01g2092 Cec04g1749 Cco04g1814 . Cmu01g1986 Cre04g1663 Cone8ag0861 Cone12ag0824 . . Lsi01g00583 . . Cme08g00949 Blo05g00705 . . . . Bpe06g00133 . . . Cmo03g00696 Cmo07g00409 . Cma20g00739 . . . . . . . . . . . . . . . . . . . Csa06g03347 Chy02g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007876 1 3 1 1 1 1 2 1 1 1 1 0 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36