Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0829 ATGGACTGCGAAGGGTGCGAGAGAAGGGTGAAGAAATCAGTACAGGGGATGAAAGGGGTAACAAGTGTTGAGGTGGAGCCCAAGCAGCAGAAGCTTACTGTGATTGGGGAGGTGGACCCCAACAAGGTGTTGCTACGTGTTAGACATCGAACGGGGAAGAAGGCAGATTTCTGGCCGTATGTGCCGTACGATATGGTCCCTCACCCTTACGCTCCTGGAGCCTACGATAAGAGAGCTCCAAGTGGGTACGTGAGAAATGTGATGGACGATCCACAAGCCTCGGCTCACGCTCGTGCCAGCTCTACTGAAGTTAAATACACGACGGCATTTAGCGACGAAAATCCCAATGCGTGTGTGGTGATGTGA 366 52.46 MDCEGCERRVKKSVQGMKGVTSVEVEPKQQKLTVIGEVDPNKVLLRVRHRTGKKADFWPYVPYDMVPHPYAPGAYDKRAPSGYVRNVMDDPQASAHARASSTEVKYTTAFSDENPNACVVM 121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7514253 7514618 - Conep12aG0085400.1 Cone12ag0829 449673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0829 121 Gene3D - 1 55 - -
Cone12ag0829 121 Pfam Heavy-metal-associated domain 1 53 IPR006121 GO:0046872(InterPro)
Cone12ag0829 121 CDD HMA 1 55 IPR006121 GO:0046872(InterPro)
Cone12ag0829 121 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 1 121 IPR045181 GO:0046872(InterPro)
Cone12ag0829 121 SUPERFAMILY HMA, heavy metal-associated domain 1 56 IPR036163 GO:0046872(InterPro)
Cone12ag0829 121 ProSiteProfiles Heavy-metal-associated domain profile. 1 56 IPR006121 GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0829 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0829 Cone-Chr12:7514253 Cone13ag0775 Cone-Chr13:7294628 1.94E-44 dispersed
Cone12ag0829 Cone-Chr12:7514253 Cone12ag1233 Cone-Chr12:9556241 3.70E-57 wgd
Cone12ag0829 Cone-Chr12:7514253 Cone8ag1286 Cone-Chr8:10569318 6.42E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1161 . Blo16g00092 . . . . . . . . . . . . Sed14g1206 . . Bhi03g00834 Tan03g2103 Cmetu11g1017 . Hepe04g1611 . . . . . . . . . . Cone12ag0829 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013554 0 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 26