Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0836 ATGTTATCAAAGTTAATGAGCTTTCTAAGGGCATGCTGGAGGGCTTCCTCCGACCCATATATTCACACAAGTCCGGATTCTGCTGGACGGCAAGAGGGATTACTCTGGTATAAGGACATTGGGCAGCACGTCAATGGTGATTTCTCAATGGCTGTCGTTCAAGCCAATAATTTGCTGGAGGATCAGAGCCAGGTCGAGTCTGGTCCCTTGAGCTTGCTCGAGTCGGGCCCATATGGCACCTTTGTTGGAGTTTATGACGGCCATGGTGGACCCGAAACATCACGATACATCTATGACAATTTATTCCCACATCTGAAAAGGTTCACCTCTGAACAGCAATCAATGTCAGTGGATGTGATAAAAAAGGCATTTCAAGCAACAGAGGAGGGGTTTATGTCTATTGTGACTAAACAATGGCCTACTAATCCTCAACTTGCAGCTGTTGGATCTTGCTGCCTGGTTGGTGTGGTTTGTGGTGGGATCCTTTACATTGCAAATGTTGGAGATTCCCGTGCTGTGCTTGGGAGACTTGTTAGGTCGACAGGTCAGGTTCTTGCCATTCAGCTATCGTCGGAACATAATGCAAGCGTAGAATCTGTTAGGCAAGAGATGCAGTCTTTGCATCCAGATGACCCACGGATAGTAGTTCTAAAGCATAATGTATGGCGAGTAAAGGGATTGATACAGGTGACTAGATCCATTGGTGATGTGTATCTAAAAAAGGCCGAATTTAACAGGGAACCTTTGTTTCCCAAGTTTCGACTTAGAGAATCCTTCAGTAAGCCAATTTTGAGCTCTGAGCCGTCCGTTTTGGTTCAAGAACTACAAGCTGAAGATCAATTTCTCATATTTGCTTCTGATGGACTATGGGAGCACCTTACCAACCAGGATGCAGTCGATATAGTTCAAAATCATCCACATAGTGGAAGTGCAAGGCGGCTTGTGAAATCTGCACTGCTAGAGGCAGCTAAGAAAAGAGAAATGCGATACTCAGATTTAAAGAAAATCGACCGTGGGGTCCGCCGCCATTTTCATGATGACATCACAGTCATTGTCCTGTTCCTCGATTCCAATCTTGTGAGCCATGCCAGCTCAGCTAGAGGCCCTGTCTTGTCTGTAAGAGGAGGTGGTGTTAACCTACCCGCAAAATCTCTAGCCCCTTGTTCCACCCCAACCGAAAAAGTGTCTGTCCAATGA 1197 45.95 MLSKLMSFLRACWRASSDPYIHTSPDSAGRQEGLLWYKDIGQHVNGDFSMAVVQANNLLEDQSQVESGPLSLLESGPYGTFVGVYDGHGGPETSRYIYDNLFPHLKRFTSEQQSMSVDVIKKAFQATEEGFMSIVTKQWPTNPQLAAVGSCCLVGVVCGGILYIANVGDSRAVLGRLVRSTGQVLAIQLSSEHNASVESVRQEMQSLHPDDPRIVVLKHNVWRVKGLIQVTRSIGDVYLKKAEFNREPLFPKFRLRESFSKPILSSEPSVLVQELQAEDQFLIFASDGLWEHLTNQDAVDIVQNHPHSGSARRLVKSALLEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVLFLDSNLVSHASSARGPVLSVRGGGVNLPAKSLAPCSTPTEKVSVQ 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7563588 7568304 + Conep12aG0086100.1 Cone12ag0836 449680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0836 398 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Cone12ag0836 398 SMART PP2C_4 41 353 IPR001932 -
Cone12ag0836 398 CDD PP2Cc 48 355 IPR001932 -
Cone12ag0836 398 SUPERFAMILY PP2C-like 56 356 IPR036457 -
Cone12ag0836 398 Gene3D - 37 366 IPR036457 -
Cone12ag0836 398 Pfam Protein phosphatase 2C 80 325 IPR001932 -
Cone12ag0836 398 PANTHER PROTEIN PHOSPHATASE 41 354 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone12ag0836 398 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169(InterPro)
Cone12ag0836 398 FunFam Phosphatase 2C family protein 36 365 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0836 Cone-Chr12:7563588 Cone20ag0618 Cone-Chr20:3681526 3.61E-213 dispersed
Cone12ag0836 Cone-Chr12:7563588 Cone12ag1243 Cone-Chr12:9613531 6.25E-214 wgd
Cone12ag0836 Cone-Chr12:7563588 Cone8ag0870 Cone-Chr8:8576582 2.83E-278 wgd
Cone12ag0836 Cone-Chr12:7563588 Cone8ag1300 Cone-Chr8:10628497 6.94E-210 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0836 K01102 - cit:102615075 665.996