Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0839 ATGTCTTATTTCCATCTCCTTTTTTCCATTCCTCCTCCTCTTCCTCCTTTTTCTTCGACCTCGCGCTCCTTATTCTTACACATTTCTGATCAGAAAATTAAAATGATGGATTTTATCTCACACCTGTTTCGAATTTCTTCTTCTTCTTCCTCGTCATCTCTGTTGGGTAATTTCTTTGAAAGACTTAGAGAAATCTGCGCTTACGCGATTTCTGCAATTCTGGGAAATATCTTCTCAGCGATCTTTACCCTCTTCTTTGCATTAGTGGGAACCTTGTTAGGAGCTATGACAGGAGCATTAATAGGCCAAGAAACAGAGAGCGGATTTGTCCGAGGAGCTGCTGTTGGGGCCATTTCTGGAGCAGTTTTCTCTATTGAAGTCTTCGAATCTTCACTTGTTCTCTGGCAATCCGATGATTCCGGTATAGGTTGCCTTTTCTACTTGATTGATGTTCTTGCAAGCCTCCTTAGTGGGAGGCTTGTTCGAGAGCGGATCGGTCCAGCCATGTTAAGTGCTGTACAAAGCCAAATGGGTGCTGTCGAGACGAGCTTTGATGATCTCCCAAATATTTTTGATACGGGTAGTAACAAAGGTTTGCCCGGAGATTCCGTTGAAAGGATTCCGAAGATTATGATTTCAAACCATAACAATGTAGATGCTTCTGGAGAGAAAGTTTGTTGCTCGGTTTGCCTTCAGGATTTCCAGCTTGGGGAGACGGTTAGAAGCTTACCTCATTGCCATCATATATTTCACTTACCATGCATAGATAAGTGGCTACTTACTCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTGA 819 42.86 MSYFHLLFSIPPPLPPFSSTSRSLFLHISDQKIKMMDFISHLFRISSSSSSSSLLGNFFERLREICAYAISAILGNIFSAIFTLFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDDSGIGCLFYLIDVLASLLSGRLVRERIGPAMLSAVQSQMGAVETSFDDLPNIFDTGSNKGLPGDSVERIPKIMISNHNNVDASGEKVCCSVCLQDFQLGETVRSLPHCHHIFHLPCIDKWLLTHGSCPLCRRDL 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7573641 7575668 - Conep12aG0086400.1 Cone12ag0839 449683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0839 272 SUPERFAMILY RING/U-box 220 272 - -
Cone12ag0839 272 CDD RING-H2_NIPL1-like 226 269 - -
Cone12ag0839 272 ProSiteProfiles Zinc finger RING-type profile. 227 269 IPR001841 -
Cone12ag0839 272 SMART ring_2 227 268 IPR001841 -
Cone12ag0839 272 Pfam YMGG-like Gly-zipper 87 122 IPR027367 -
Cone12ag0839 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 272 IPR013083 -
Cone12ag0839 272 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 60 271 IPR044523 -
Cone12ag0839 272 FunFam NEP1-interacting protein-like 1 187 272 - -
Cone12ag0839 272 Pfam Ring finger domain 227 269 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0839 Cone-Chr12:7573641 Cone9ag1634 Cone-Chr9:11624420 1.41E-79 dispersed
Cone19ag0063 Cone-Chr19:390709 Cone12ag0839 Cone-Chr12:7573641 1.66E-38 transposed
Cone12ag0839 Cone-Chr12:7573641 Cone8ag0872 Cone-Chr8:8586233 4.64E-143 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0839 - - - 0.0