Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone12ag0842 | ATGGATATACGGTTTCCATTTTCTCCAGCGGAGATTGCCAAGGTCCGCATGGTTCAGTTCGGCATACTCAGCCCCGATGAGATTAGGCAAATGTCTGTGGTGCAGATTGAGCATGGCGAGACGACGGAGAGGGGGAAGCCTAAAGTGGCTGGTCTTAGTGATCCTCGGCTTGGTACGATTGACAGGAAGTTGAAATGTGAAACTTGCACCGCTAACATGGCAGAGTGTCCAGGCCACTTTGGGCATCTTGAACTTGCCAAACCTATGTTCCATATTGGGTTTATGAAGACTGTGCTTAGTATCATGCGTTGCGTTTGCTTCAATTGTTCGAAAATTTTGGTTGACGAGGATGATCACAAGTTCAAGCAAGCCTTGAGGATAAAGAATCCCAAGAATAAGCTTAGAAAGATTTTGGATGCCTGCAAGAACAAGACCAAGTGCGAGGGTGGTGATGAAATTGATGTTCAAGGTCAGGAAACTGACGAACCAGTGAAGAAAAGTAGAGGTGGCTGTGGTGCTCAACAGCCAAAACTCACGATAGATGGCATGAAAATGATTGCTGAATACAAAGCTCAAAGGAAGAAAAGTGATGATCAGGAACAACTCCCTGAACCCGTGGAAAGAAAACAGACACTAACTGCAGAAAGGGTTCTTAGTGTATTGAAGAGGATAAGTGATGAGGATTGTCAGCTGTTAGGCTTGAATCCAAAATACGCTCGTCCCGACTGGATGATTCTACAAGTTCTTCCAATTCCTCCACCTCCCGTAAGACCTTCTGTTATGATGGACACCTCATCCAGAAGTGAGGATGATCTTACTCATCAATTGGCTATGATTATAAGGCACAATGAAAATCTTAGGAGGCAGGAGAGAAATGGGTCACCTGCACATATTATTTCTGAGTTTGCACAGTTGTTGCAGTTCCACATAGCTACATATTTTGATAATGAGCTGCCAGGATTGCCAAGGGCTACCCAAAGATCGGGGAGGCCTATTAAATCTATATGTAGTAGGCTCAAGGCGAAGGAAGGCCGAATTAGGGGTAATTTGATGGGGAAACGTGTAGATTTTTCGGCACGAACGGTTATAACACCTGATCCAACCATCAATATTGATCAATTGGGTGTCCCATGGAGCATTGCTTTGAATCTCACATATCCTGAGACAGTGACCCCATATAACATTGAGAGATTGAAGGAGCTTGTGGAATATGGGCCCCATCCTCCACCTGGAAAAACTGGTGCAAAGTATATTATAAGGGACGATGGACAAAGGCTTGATCTTCGCTACTTAAAGAAGAGTAGCGATCACCATTTGGAGCTTGGATACAAGGTGGAGCGCCATCTAATTGATGGGGACTTTGTCCTCTTTAATCGTCAGCCAAGCCTGCATAAAATGTCTATTATGGGACACAGAATCAAGATTATGCCCTACTCCACCTTCCGCCTTAATTTGTCCGTCACTTCTCCATACAATGCTGATTTTGACGGCGATGAGATGAATATGCATGTTCCTCAGTCATTTGAAACAAGAGCAGAAGTACTGGAGCTCATGATGGTTCCTAAATGCATTGTCTCACCTCAGTCAAATCGACCAGTAATGGGAATCGTCCAGGATACCCTCTTAGGATGCCGTAAAATCACAAAGAGGGATACCTTTATAACAAAGGATGTTTTTATGAATATCTTAATGTGGTGGGAGGATTTTGATGGAAAAATCCCTGCCCCGGCAATTTTGAAGCCAAAGCCTCTTTGGACTGGTAAACAGGTGTTCAATCTTATTATACCGAAACAGATAAACCTCACAAGAACTGCTGCTTGGCATTCGGAATCAGAATCTGGAACAATCACCCCAGGGGATACTTTTGTTAGAATTGAGAAAGGGGAGCTACTTACCGGAACTCTTTGCAAGAAAACACTTGGGACATCTACTGGAAGTCTTATACATGTTATTTGGGAAGAGGTTGGTCCAGATGCAGCTCGCAAATTTCTCGGTCACACGCAATGGCTAGTTAACTATTGGCTTTTGCAGAATGCATTTAGTATTGGGATTGGAGATACAATTGCTGATGCAGCAACTATGGAGAAAATCAATGAAACCATTTCTAAAGCTAAAAATGAGGTGAAAATCCTTATCACCAAATTCCATGAAAAGAGACTAGAGCCAGAACCTGGACGAAGTATGATGGACTCGTTTGAAAACAATGTGAATCAGGTGTTGAATAGGGCTCGTGACGATTCTGGTAGTAGTGCCCAAAAGAGCTTGTCTGAAAGCAACAATCTTAAGGCGATGGTTACTGCAGGATCCAAAGGCAGTTTTATTAACATCTCACAGATGACTGCTTGTGTGGGTCAGCAGAATGTTGAAGGAAAGCGTATACCTTTTGGGTTCACCGGTCGTACATTGCCCCATTTCACTAAAGATGACCTTGGACCAGAAAGTCGTGGGTTTGTCGAAAATTCATATCTGCGTGGACTGACCCCACAAGAGTTCTTTTTCCATGCTATGGGTGGTAGGGAAGGTCTTATTGATACTGCAGTGAAGACTTCTGAAACGGGGTACATCCAAAGGAGGCTAGTGAAGGCCATGGAAGATATCATGGTCAAATATGATGGGACTGTTAGGAACTCACTAGGGGATGTCATTCAATTTCTTTATGGGGAAGATGGTATGGATGCTGTCTGGATTGAATCGCAGAAGCTAGATTCTTTGAAGATGAAGAAAGCGGAATTTAATAGGATCTTCAGATATGAATTGGACAATGAGAACTGGAAACCAAATTACATGTTGCCAGAACATGTTGAAGATTTGAAAACCATTAGAGAGTTCCGTAATGTGTTTGATGCTGAAGTTTCAAAACTCGAAGCAGACAGATATCAGCTTGGAACTGAGATTGCAACCACGGGTGATAATACTTGGCCAATGCCTGTTAACCTAAAGAGGCTTATTCAAAATGCACAAAAGACTTTTAAGATTGACTTTCGACGGGCTTCTGATATGCACCCTATGGAAATTGTTGAAGCTATTGATAAACTCCAAGAGAGACTAAAGGTTGTTCCTGGTGAAGATCAGTTAAGTGTGGAAGCTCAAAAGAATGCCACCCTTTTCTTCAATATATTGCTCCGTAGCACTTTCGCTAGCAAAAGAGTTCTGGAGGAGTACAGGCTCACTCGTGAAGCATTTGAGTGGGTTATTGGTGAGATAGAGTCACGATTCTTACAGTCCCTAGTCGCTCCAGGGGAAATGATTGGTTGTGTAGCTGCACAGTCCATTGGTGAGCCTGCCACTCAGATGACTCTTAATACCTTCCATTATGCTGGTGTGAGTGCAAAGAATGTCACTCTAGGTGTTCCTAGACTGAGGGAAATTATTAATGTGGCGAAGAGAATCAAAACACCTTCCCTCTCTGTTTATCTGAAGCCTGAAGCTAACAAAACCAAGGAGAGGGCTAAGAGTGTTCAATGTGCCTTGGAATACACTACACTAAGAAGTGTTACTCAAGCCACAGAAGTATGGTATGATCCAGACCCCATGAGCACCATTATTGAGGAGGATGTTGATTTTGTGAAGTCCTACTATGAAATGCCAGACGAAGAAATTGCTCCTGAAAAAATATCTCCTTGGTTGCTTCGTATAGAGTTGAATCGTGAAATGATGGTGGATAAGAAACTGAGCATGGCTGACATTGCAGAGAAGATCAACCTCGAATTTGATGATGATTTGACATGCATATTCAATGATGACAATGCTGAACATTTGATCCTCCGTATCCGTATAATGAATGATGAAGCACCTAAAGGGGAATTGAATGATGAATCTGCTGAAGATGATGTCTTCCTGAAGAAGATTGAGAGCAACATGCTTACTGAAATGGCTCTTCGTGGTATACCAGACATCAATAAGGTGTTCATAAAAACGGGTAAAGTCAACAAGTTTGATGAGAATGAGGGGTTTAAGCCAGAGAATGAGTGGATGCTTGATACAGAAGGTGTCAACCTTTTGGCTGTTATGTGTCATGATGATGTTGATGCAAGGAGAACCACAAGCAATCACTTGATTGAAGTTATTGAGGTTCTTGGAATTGAGGCGGTCCGTAGGTCCCTCTTGGATGAGTTGCGTGTTGTTATATCATTTGATGGATCTTATGTGAATTACAGGCACCTTGCCATTCTTTGTGATACAATGACATATCGTGGTCACCTCATGGCCATTACACGTCATGGTATTAATAGAAACGATACTGGGCCTATGATGAGATGCTCCTTTGAAGAAACTGTGGACATTTTACTTGATGCCGCAGTCTATGCTGAAACAGATTACTTGAGGGGTGTCACTGAAAATATAATGTTGGGTCAACTAGCGCCAATTGGAACTGGAGACTGTGCATTATATTTGAACGATGAGATGTTGAAAAATGCTATTGAACTGCAGTTACCCAGCTACATGGACGGTCTGGATTTTGGCATGACACCTTCCAGGTCACCTGTCTCAAGCACGCCTTATCATGAGGGAATGATGTCTCCAAGCTATTTACTAAGCCCGAGTCTCCGCCTTTCACCTATTAGTGATGCTCAGTTTTCACCTTATGTTGGTGGAATGGCATTTTCCCCTACTTCATCTCCAGGCTACAGCCCTTCATCTCCTGGTTACAGCCCATCATCCCCTGGATATAGCCCTACATCTCCTGGGTATAGTCCTACTTCTCCTGGCTATAGCCCTACATCTCCTGGCTACAGCCCGACTTCCCCAACCTATAGTCCTAGCTCACCTGGTTATAGTCCGACCAGTCCTGCATATTCTCCTACAAGTCCATCTTATAGTCCCACCTCTCCTAGTTACAGCCCCACATCTCCCAGTTATAGCCCCACCTCACCCAGCTACAGCCCTACATCTCCTAGTTACAGCCCCACCTCACCAAGTTATAGCCCTACGTCACCTGCTTACAGTCCCACTTCTCCAGCTTATAGTCCCACTTCTCCTGCTTATAGCCCCACTTCGCCTTCTTACAGCCCCACTTCCCCTTCCTACAGCCCCACTTCTCCCTCTTACAGCCCCACATCTCCCTCTTACAGCCCCACATCTCCTTCTTACAGCCCCACATCTCCTTCTTACAGTCCTACCTCTCCTGCTTATAGCCCAACATCTCCGGGCTACAGCCCAACTTCCCCAAGTTACAGCCCCACGTTGCCAAGCTACAGCCCGACATCTCCAAGTTACAATCCTCAGTCTGCAAAGTACAGCCCGTCACAGGCGTATTCACCCAGCAGCCCGAGATTGTCCCCTTCAAGTCCTTATAGTCCTACATCTCCAAACTACAGCCCAACATCGCCATCATATTCACCAACATCTCCAGCATATTCTCCCTCTAGCCCATCGTATAGTCCCAGCAGCCCCTTCAATTCTGGAGTGAGCCCGGACTACAGCCCCAGCTCTCCACAGTACAGCCTGAGTGCAGGGTACTCGCCTAGTGCTCCTGGGTACTCGCCTTCGTCTACTAGTCAGTACACTCCACAAAAGAGTGATAAAGATGATAGGAGCGATAAGGATTGA | 5550 | 44.47 | MDIRFPFSPAEIAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHKFKQALRIKNPKNKLRKILDACKNKTKCEGGDEIDVQGQETDEPVKKSRGGCGAQQPKLTIDGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPKPLWTGKQVFNLIIPKQINLTRTAAWHSESESGTITPGDTFVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKILITKFHEKRLEPEPGRSMMDSFENNVNQVLNRARDDSGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFTGRTLPHFTKDDLGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFNRIFRYELDNENWKPNYMLPEHVEDLKTIREFRNVFDAEVSKLEADRYQLGTEIATTGDNTWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDQLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEHLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKTGKVNKFDENEGFKPENEWMLDTEGVNLLAVMCHDDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSRSPVSSTPYHEGMMSPSYLLSPSLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTLPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPSYSPSSPFNSGVSPDYSPSSPQYSLSAGYSPSAPGYSPSSTSQYTPQKSDKDDRSDKD | 1849 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 7595818 | 7606060 | + | Conep12aG0086700.1 | Cone12ag0842 | 449686 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone12ag0842 | 1849 | Gene3D | - | 805 | 863 | - | - | |
| Cone12ag0842 | 1849 | Coils | Coil | 694 | 714 | - | - | |
| Cone12ag0842 | 1849 | FunFam | DNA-directed RNA polymerase subunit | 385 | 447 | - | - | |
| Cone12ag0842 | 1849 | PANTHER | DNA-DIRECTED RNA POLYMERASE | 14 | 1469 | IPR045867 | GO:0001055(PANTHER)|GO:0003899(InterPro)|GO:0003899(PANTHER)|GO:0005665(PANTHER)|GO:0006351(InterPro) | |
| Cone12ag0842 | 1849 | SMART | rpolaneu7 | 242 | 548 | IPR006592 | GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro) | |
| Cone12ag0842 | 1849 | FunFam | DNA-directed RNA polymerase subunit | 1160 | 1295 | - | - | |
| Cone12ag0842 | 1849 | Gene3D | RNA polymerase II, clamp domain | 5 | 128 | IPR044893 | - | |
| Cone12ag0842 | 1849 | Gene3D | RNA polymerase II, clamp domain | 267 | 315 | IPR044893 | - | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1, domain 7 | 1160 | 1294 | IPR007073 | GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro) | |
| Cone12ag0842 | 1849 | ProSitePatterns | Eukaryotic RNA polymerase II heptapeptide repeat. | 1620 | 1626 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | SUPERFAMILY | beta and beta-prime subunits of DNA dependent RNA-polymerase | 6 | 1469 | - | - | |
| Cone12ag0842 | 1849 | ProSitePatterns | Eukaryotic RNA polymerase II heptapeptide repeat. | 1765 | 1771 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | ProSitePatterns | Eukaryotic RNA polymerase II heptapeptide repeat. | 1704 | 1710 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | CDD | RNAP_II_Rpb1_C | 1054 | 1466 | - | - | |
| Cone12ag0842 | 1849 | CDD | RNAP_II_RPB1_N | 18 | 871 | - | - | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1 C-terminal repeat | 1733 | 1746 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1 C-terminal repeat | 1705 | 1718 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1 C-terminal repeat | 1607 | 1620 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1 C-terminal repeat | 1621 | 1634 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1 C-terminal repeat | 1635 | 1648 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1 C-terminal repeat | 1766 | 1779 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1 C-terminal repeat | 1663 | 1676 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1 C-terminal repeat | 1565 | 1578 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1 C-terminal repeat | 1677 | 1690 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1 C-terminal repeat | 1691 | 1704 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1 C-terminal repeat | 1551 | 1564 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1 C-terminal repeat | 1780 | 1793 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1 C-terminal repeat | 1593 | 1606 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1 C-terminal repeat | 1649 | 1662 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1 C-terminal repeat | 1536 | 1550 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1 C-terminal repeat | 1794 | 1807 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1 C-terminal repeat | 1804 | 1814 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1 C-terminal repeat | 1579 | 1592 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | MobiDBLite | consensus disorder prediction | 1538 | 1759 | - | - | |
| Cone12ag0842 | 1849 | Gene3D | RNA polymerase Rpb1, domain 3 | 528 | 681 | IPR042102 | - | |
| Cone12ag0842 | 1849 | Gene3D | - | 1417 | 1460 | - | - | |
| Cone12ag0842 | 1849 | FunFam | DNA-directed RNA polymerase subunit | 267 | 315 | - | - | |
| Cone12ag0842 | 1849 | ProSitePatterns | Eukaryotic RNA polymerase II heptapeptide repeat. | 1718 | 1724 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1, domain 1 | 14 | 350 | IPR007080 | GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro) | |
| Cone12ag0842 | 1849 | MobiDBLite | consensus disorder prediction | 1538 | 1849 | - | - | |
| Cone12ag0842 | 1849 | MobiDBLite | consensus disorder prediction | 1772 | 1837 | - | - | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1, domain 2 | 352 | 520 | IPR000722 | GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro) | |
| Cone12ag0842 | 1849 | FunFam | DNA-directed RNA polymerase subunit | 1416 | 1460 | - | - | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1, domain 4 | 713 | 818 | IPR007083 | GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro) | |
| Cone12ag0842 | 1849 | FunFam | DNA-directed RNA polymerase subunit | 4 | 128 | - | - | |
| Cone12ag0842 | 1849 | Gene3D | - | 343 | 527 | - | - | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1, domain 3 | 523 | 687 | IPR007066 | GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro) | |
| Cone12ag0842 | 1849 | Gene3D | - | 1160 | 1295 | IPR038593 | - | |
| Cone12ag0842 | 1849 | ProSitePatterns | Eukaryotic RNA polymerase II heptapeptide repeat. | 1669 | 1675 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | Gene3D | - | 686 | 804 | IPR038120 | - | |
| Cone12ag0842 | 1849 | PRINTS | Proline rich extensin signature | 1569 | 1590 | - | - | |
| Cone12ag0842 | 1849 | PRINTS | Proline rich extensin signature | 1540 | 1556 | - | - | |
| Cone12ag0842 | 1849 | PRINTS | Proline rich extensin signature | 1614 | 1631 | - | - | |
| Cone12ag0842 | 1849 | PRINTS | Proline rich extensin signature | 1632 | 1657 | - | - | |
| Cone12ag0842 | 1849 | PRINTS | Proline rich extensin signature | 1597 | 1613 | - | - | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1, domain 5 | 825 | 1415 | IPR007081 | GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro) | |
| Cone12ag0842 | 1849 | ProSitePatterns | Eukaryotic RNA polymerase II heptapeptide repeat. | 1772 | 1778 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | ProSitePatterns | Eukaryotic RNA polymerase II heptapeptide repeat. | 1627 | 1633 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | FunFam | DNA-directed RNA polymerase subunit | 689 | 804 | - | - | |
| Cone12ag0842 | 1849 | Gene3D | RNA polymerase ii | 384 | 447 | - | - | |
| Cone12ag0842 | 1849 | ProSitePatterns | Eukaryotic RNA polymerase II heptapeptide repeat. | 1779 | 1785 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | ProSitePatterns | Eukaryotic RNA polymerase II heptapeptide repeat. | 1690 | 1696 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | ProSitePatterns | Eukaryotic RNA polymerase II heptapeptide repeat. | 1676 | 1682 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | ProSitePatterns | Eukaryotic RNA polymerase II heptapeptide repeat. | 1786 | 1792 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | FunFam | DNA-directed RNA polymerase II subunit RPB1 | 434 | 527 | - | - | |
| Cone12ag0842 | 1849 | FunFam | DNA-directed RNA polymerase subunit | 528 | 681 | - | - | |
| Cone12ag0842 | 1849 | ProSitePatterns | Eukaryotic RNA polymerase II heptapeptide repeat. | 1613 | 1619 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | Pfam | RNA polymerase Rpb1, domain 6 | 891 | 1075 | IPR007075 | GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro) | |
| Cone12ag0842 | 1849 | Gene3D | - | 864 | 916 | - | - | |
| Cone12ag0842 | 1849 | ProSitePatterns | Eukaryotic RNA polymerase II heptapeptide repeat. | 1606 | 1612 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) | |
| Cone12ag0842 | 1849 | ProSitePatterns | Eukaryotic RNA polymerase II heptapeptide repeat. | 1683 | 1689 | IPR000684 | GO:0003677(InterPro)|GO:0006366(InterPro) |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone12ag0842 | K03006 | - | - | csv:101220606 | 2896.69 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone11ag1271 | Cone-Chr11:9448997 | Cone12ag0842 | Cone-Chr12:7595818 | 7.03E-216 | dispersed | |
| Cone12ag0842 | Cone-Chr12:7595818 | Cone18ag0314 | Cone-Chr18:1538031 | 2.28E-240 | dispersed | |
| Cone1ag0266 | Cone-Chr1:1780011 | Cone12ag0842 | Cone-Chr12:7595818 | 2.41E-27 | transposed | |
| Cone12ag0842 | Cone-Chr12:7595818 | Cone8ag0873 | Cone-Chr8:8596528 | 0 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi18g162 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cone12ag0842 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0004033 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 5 | 6 | 1 | 43 |