Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0858 ATGTCAGTAGAGGAAAATGACATTGATGGAGTGCCAGAAAGCCATGTTGAAGATACTCCTGAACCCGAGAAACAATTTTCAGGCGTAATTAGTGAGAGCAAAGGAAATCTTGTTGTGGAAAATGGATTGGGTGATTGCGACCAACATACTGATGATGATCATGACCAGCTTGTGCAAATGGTTATTGATTTAAAGTCTCAAAATGAGTTTTTGAAGTCTCAACTACAAAGCACTGAAAATGTTCAGTCCGGAAATAGTTTCTCCAAACATGAAAAAGCAACCGGACAGGAAGAAGGCCCAGTACTTGGCGATGTGAAAGGACTCGAAGAAAGAATAAACTCTTTCAACAAAGAACTATTGGAAGAAAGACAAACAAGAGTTACGGCAGAGGGAGCCCTGAAGCATCTTCAGGAAGCGCACTCAGAAGCAGATATGAAAGCTCAAGAGCTCTCTGCAAAGCTTGCTGATGCTCAACAGAAGCTTGACCAGGAAATAAAAGAGCGTGATGAGAAATACACTGAACTTGACTCAAAGTTTAGCAGGCTTCACAAACGTGCAAAACAGAGGATTCATGATGTTCAGAAGGAAAAAGATGATCTTGAGGTCCGGTTTCGTGACGTTAATGAAACAGCGGAGCGTGCCTTGTCCCAACAGGCCACATTGCAACAAGAGTTGGAACGAAGTCGCCAGCAAGCTACTGAAGCATTGAAAGCAATGGATGCGGAGAGGCAACAATTACGAAGTGCAAACAATAAGCTCCGAGACAACATAGAGGAACTGCGAAATTCATTGCAACCTAAAGAAAATGCTCTTGAGGCATTGCAACAGTCACTTTTGGAGAAGGACCAGATGCTGGAACACATGCGAGGGCTTCTTCAAGCTGCTGAGGAGAAAAGGCAAGCTTTAATTGCTGAGCTCTCTGCCAAACATCAGAAGAGCTTGGAGAGTTTGGAGGCCCAAATAGCTGATGCTTTATCTGATAGGAACAAAGCAACTGAAGCCATTTCTTCGCTGCAGGTATTGGTCGCAGAGAAAGAATCAAAGATCGCAGAAATGGATGCAACTTCAACTGGTGAGGCAGCACGCCTTAGAGCTGCGGCAGAAACTGTAAAAGGAGAAATTGCTCAATTGAGACATGAGCATGAGAAAGAAAAGGAGAGTTGGGAAGCTGCCTTGCAGGCATTGAAAGTGAGGCTTGAAATTGCTGAGAGTAATTGCATACGTGCGGAAGTTGAAGTAGCTAAAACGAAAAGTCAGCTAGATTCAGAAGTTTCTGCACAAGCCCGCATTTTGAGCATACGAGATCTTGAACTAGCAGCTGCGAAAGAAGAGGTCACCCGCCTTGAAACTGAATTTTCTTCTTACAAGGCCCGTGCTCATGCACTTCTTCAGAAGAAGGATGCAGAACTAGCTGCAGCTGTGGATTCTGAACAAATTAATGCTCTCGAGGAAGCTGTAAAGGAGGCCGAGAAAGAAGTAATGTTAGTATCAGCAGAAAAGGATCAGGCCGTGCTAGATCTTCAGAATGCTTTGGCTAATCATGATAAAGAACTTGCAGAAAGAGAGATGGCCCTTACTGAGGCCAAGCAGCAGATAAAGAGTTTAGAAACAAAGCTTGATTCTGCTATTACCCATCTCCATTCAGAGAAAGAAGCATGGGAAGTGACACTCAAAAACCAGGAAGAAATATGGCAGATCAGATGTGAAGCAGTGAAGGCAGAAACTGAAGCATCCTCTGGGCAGGATGTGCAAAAAGAATTAGAAGAACTCAAACTGGGATACAAGAGATTGAAGGAAGAGCATAATTCGTTCCGTGATCTTGCTGATAAAATGATTGGGGAGAAGGATAAAGAAATCTCCAAGCTGTTAGATGACAATGAGAATCTTCGCCGATCTCTGGAATCAAGACCACCAGCTGATCGTAGTGACGGAAATGAAATCGTCCAAAAACAGGATGCATCAAACATAAGCACCTCTGCTGCAGAACAGCAAATTCTGATTCTAGCAAGGCAGCAAGCTCAGAGAGAGGAAGAACTAGCACAATCACAGCGGCATATATTAGCACTTCAAGAGGAACTTGAGGAGCTGGAACGTGAGAATCGCCTTCACAGCCAACAGGAAGCCATGTTGAAACATGAGCTACGTAACATGGAAAGATCCCAGAAGAGGGAAGGGGTGGATATGACATATCTTAAGAATGTCATCTTGAAGCTTCTTGAAACAGGTGAAGTTGAGGCTTTGCTGCCCGTGGTTGGGATGCTTCTTCAATTTAGTCCTGATGAGATGCAGAAGTGTCAACAAGCATACCGTGACTCGGTCGAGGTTCCACCAAGCACGGAAAGTGACGGAGGATCTGCTCTCTCGCTTTTCTCACGATTCTCATTTACATGA 2391 44.12 MSVEENDIDGVPESHVEDTPEPEKQFSGVISESKGNLVVENGLGDCDQHTDDDHDQLVQMVIDLKSQNEFLKSQLQSTENVQSGNSFSKHEKATGQEEGPVLGDVKGLEERINSFNKELLEERQTRVTAEGALKHLQEAHSEADMKAQELSAKLADAQQKLDQEIKERDEKYTELDSKFSRLHKRAKQRIHDVQKEKDDLEVRFRDVNETAERALSQQATLQQELERSRQQATEALKAMDAERQQLRSANNKLRDNIEELRNSLQPKENALEALQQSLLEKDQMLEHMRGLLQAAEEKRQALIAELSAKHQKSLESLEAQIADALSDRNKATEAISSLQVLVAEKESKIAEMDATSTGEAARLRAAAETVKGEIAQLRHEHEKEKESWEAALQALKVRLEIAESNCIRAEVEVAKTKSQLDSEVSAQARILSIRDLELAAAKEEVTRLETEFSSYKARAHALLQKKDAELAAAVDSEQINALEEAVKEAEKEVMLVSAEKDQAVLDLQNALANHDKELAEREMALTEAKQQIKSLETKLDSAITHLHSEKEAWEVTLKNQEEIWQIRCEAVKAETEASSGQDVQKELEELKLGYKRLKEEHNSFRDLADKMIGEKDKEISKLLDDNENLRRSLESRPPADRSDGNEIVQKQDASNISTSAAEQQILILARQQAQREEELAQSQRHILALQEELEELERENRLHSQQEAMLKHELRNMERSQKREGVDMTYLKNVILKLLETGEVEALLPVVGMLLQFSPDEMQKCQQAYRDSVEVPPSTESDGGSALSLFSRFSFT 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7701430 7710060 + Conep12aG0088300.1 Cone12ag0858 449702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0858 796 Coils Coil 511 545 - -
Cone12ag0858 796 MobiDBLite consensus disorder prediction 75 101 - -
Cone12ag0858 796 Coils Coil 672 713 - -
Cone12ag0858 796 Coils Coil 133 174 - -
Cone12ag0858 796 Gene3D - 159 323 - -
Cone12ag0858 796 Coils Coil 183 277 - -
Cone12ag0858 796 Coils Coil 580 607 - -
Cone12ag0858 796 Coils Coil 360 419 - -
Cone12ag0858 796 Coils Coil 285 334 - -
Cone12ag0858 796 Coils Coil 612 632 - -
Cone12ag0858 796 Coils Coil 472 499 - -
Cone12ag0858 796 Coils Coil 438 458 - -
Cone12ag0858 796 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 48 772 - GO:0007131(PANTHER)
Cone12ag0858 796 MobiDBLite consensus disorder prediction 75 90 - -
Cone12ag0858 796 ProSiteProfiles GRIP domain profile. 721 768 IPR000237 -
Cone12ag0858 796 SMART 1grip 724 768 IPR000237 -
Cone12ag0858 796 MobiDBLite consensus disorder prediction 628 647 - -
Cone12ag0858 796 MobiDBLite consensus disorder prediction 1 32 - -
Cone12ag0858 796 Pfam GRIP domain 725 765 IPR000237 -
Cone12ag0858 796 Coils Coil 105 125 - -
Cone12ag0858 796 MobiDBLite consensus disorder prediction 8 22 - -
Cone12ag0858 796 Coils Coil 61 81 - -
Cone12ag0858 796 MobiDBLite consensus disorder prediction 628 656 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0858 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0858 Cone-Chr12:7701430 Cone8ag0888 Cone-Chr8:8676627 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1180 Blo04g00866 . . . Bpe15g00495 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0888 Cone12ag0858 . . . . . . . . . . . . . . . . . Cma16g01265 . . . . . . . . . . . . . . . . . . . Lsi07g01066 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007597 1 2 1 0 1 1 3 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 2 1 36