Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0859 ATGTTCTTAGAAGAAGTAGATGAAGCCATTATCCAGGAGGTTGAAATGGAGGATATAGAAGAAGAAGGTGATGAAGAAGAAGAAGAGTCTGTTATAGATATAGACGGCTGTGATGCAAAGAACCCATTTGCAGTTGTTGATTACGTGGATGATCTCTATGCATTTTACAGAAAGATGGAGGCTCATAGCTGTGTTTTACCAAATTATATGGAGCAACAGTTTGACATTAATGAGAGGATGAGGGCTATATTGATTGACTGGCTTATTGAGGTGCATGACAAGTTTGAATTGATGGGAGAGACATTGTTTCTAACAGTGAACATAATAGACAGATTTCTAGCCCAACAGACAGTGGTGAGAAAGAAGCTTCAGCTAGTTGGACTAGTTGCTTTGCTCTTAGCTTGCAAATACGAAGAGGTTTCTGTTCCCATTGTAGAGGACTTGGTCCTTATTTCAGACAAAGCTTACTCTAGACAAGAAGTCCTTGAAATGGAGACACTCATGCTCAACAAACTGCAGTTCAACATGTCAGTTCCAACTCCCTATGTCTTCATGCAGAGGTTCCTCAAGGCTAGTACAACTACTACTACTGGTACTCAGTCTGAGAAAAAGAAGATAGAGCTACTGTCCTTCTTCTTGATGGAGCTTTCATTGGTTGAGTATGAAATGATCAACTTCTCTCCTTCTTTATTAGCTGCTGCTGCTACCTACACCGCTCAGTGCACTCTTTATGGATTTAAGCAGCAGTGGAGCAGGACCTGTGAATGGCATTCAGGCTACACTCAAGACAAGCTATTAAAATGTTCAAGAATGATGGTGGGTTTTCACCAGAAGGCAGCGACCGGGAAATTGACAGGAGTGTATAGGAAGTATAGTACATCAAAGTATTCATATACTTCAAGAAGTGAGGCAGCTTGTTTTCTTTTGGAGACACGAGAAATATAA 945 40.63 MFLEEVDEAIIQEVEMEDIEEEGDEEEEESVIDIDGCDAKNPFAVVDYVDDLYAFYRKMEAHSCVLPNYMEQQFDINERMRAILIDWLIEVHDKFELMGETLFLTVNIIDRFLAQQTVVRKKLQLVGLVALLLACKYEEVSVPIVEDLVLISDKAYSRQEVLEMETLMLNKLQFNMSVPTPYVFMQRFLKASTTTTTGTQSEKKKIELLSFFLMELSLVEYEMINFSPSLLAAAATYTAQCTLYGFKQQWSRTCEWHSGYTQDKLLKCSRMMVGFHQKAATGKLTGVYRKYSTSKYSYTSRSEAACFLLETREI 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7710310 7711796 - Conep12aG0088400.1 Cone12ag0859 449703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0859 314 SUPERFAMILY Cyclin-like 178 301 IPR036915 -
Cone12ag0859 314 Pfam Cyclin, C-terminal domain 179 302 IPR004367 -
Cone12ag0859 314 Gene3D - 65 177 - -
Cone12ag0859 314 Gene3D - 51 300 - -
Cone12ag0859 314 FunFam G2/mitotic-specific cyclin-1 167 300 - -
Cone12ag0859 314 PIRSF Cyclin_A_B_D_E 4 313 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cone12ag0859 314 SMART Cyclin_C_2 179 305 IPR004367 -
Cone12ag0859 314 SMART cyclin_7 183 274 IPR013763 -
Cone12ag0859 314 SMART cyclin_7 86 170 IPR013763 -
Cone12ag0859 314 Pfam Cyclin, N-terminal domain 51 177 IPR006671 -
Cone12ag0859 314 ProSitePatterns Cyclins signature. 81 112 IPR048258 -
Cone12ag0859 314 Coils Coil 9 29 - -
Cone12ag0859 314 PANTHER CYCLINS 26 292 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone12ag0859 314 SUPERFAMILY Cyclin-like 40 176 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0859 Cone-Chr12:7710310 Cone9ag1624 Cone-Chr9:11579755 1.44E-94 dispersed
Cone12ag0859 Cone-Chr12:7710310 Cone17ag1451 Cone-Chr17:9849759 3.36E-124 wgd
Cone12ag0859 Cone-Chr12:7710310 Cone20ag0025 Cone-Chr20:155965 7.56E-106 wgd
Cone12ag0859 Cone-Chr12:7710310 Cone4ag2018 Cone-Chr4:14050059 3.71E-128 wgd
Cone12ag0859 Cone-Chr12:7710310 Cone6ag1701 Cone-Chr6:12844184 3.11E-146 wgd
Cone12ag0859 Cone-Chr12:7710310 Cone7ag1934 Cone-Chr7:12340108 1.02E-129 wgd
Cone12ag0859 Cone-Chr12:7710310 Cone8ag0889 Cone-Chr8:8686330 8.01E-191 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0859 K21777 - rcu:8268759 427.172