Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0861 ATGGGAGGCGATGGAGATGTTGAAGATCCGAGAGAAGCGAACGCTAGTGATGGAGTCAACGCGGCCAACGCCAACGTTAACATCAATATCCGATGCTCGAGTGGTACGAAGTTTTCCGTGCAGATCAACCTCGATTCTACGGTCGGATCTTTCAAAGCTGTTCTTACGGATAAGAGCGATGTTCCGGCCGATCAGCAGCGGTTGATTTACAAGGGCCGGATCTTGAAGGATGATCAGACTCTGGAAACCTACGGGTTAGAGGCAGACCACACTATCCACTTGGTTCGTGGTTTTGCTGCATCATCCAATACTTCTAGCAGTCCAAATGTGGCGGGTCCAAATACTATTCCAAGTAATCCAGGAGATGTTGATCCAAATGTGGGTGGGCCATTTGGAGGATCTGGTCTTGGATCTTCCCTATTTCCTGGACTTGGCAGTGAACTAGGTAGCAGTGATGGTTTATTTGGAGCTGGACTTATGGATTTTGAACAGGTGCAACAGCAGTTGACTCAAAACCCGAATGTAATGAGAGATATAATGAATGCACCTGCTGTACAGAACCTTTTGAATAACCCTGATATAATGCGGAATTTAATTATGAATAACCCTCAAATGCGTGAAATCATTGATCGGAACCCTGAGCTTGGGCACATTCTTAATGATCCCAGCACTCTTCGTCAGACTCTTGAAGCTGCAAGAAATCCTGAGCTCATGCGTGAGATGATGCGGAATACTGATAGGGCCATGAGCAACATTGAATCCTCTCCTGAGGGATTTAACATGCTTAGGCGCATGTATGAAACTGTTCAAGAGCCATTTTTAAATGCAACAACAGCGACTGGGAATACTGGAAATGATAGCTCAAATCCCTTTGCAGCACTTTTGGGGACCCAAGGTGCGGATCAAACCAATCGATCAACCACTAACTTGGAAACTGGATCTCCTGCTCCTAACACAAATCCACTTCCGAACCCCTGGACCTCTGGTGGGACTGGAGGCGCCCAAACAAACACTACTAGGTCGATTCCTACCGGAGATGTTAGGCCACAGGCAACCCCTGGCTTAGCTGGTCTAGGTTTTCCAAACTTGGAAGGCATGGCAAGTGCTATGCCGGATCCTGCTATGCTGAATCAGCTGATGCAGAATCCAGCTGTTTCTCAAATGATGCAAAGCCTACTTTCTAACCCTCAGTACATGAACCAGATTCTTGGCCTGAATCCCCAACTGCGCAGCTTGCTTGATTCCAATACTCAATTAAGAGAGATGATGCAAAACCCAGAATTTTTGCGGCAGTTGACATCACCAGATACAATGCAGCAACTGTTAACTTTGCAGCAATCTCTTCTGTCACAGTTAGGTCAGCAACAGACAACCCAGGACCCAAGTCAGACCGGTGGAGGTCCAGGATCACCAAACATCCCAAGCAGGGAGATGTTAATGAATATGTTTGGTGAACTTGGAGCTGGCAGCCTGGGTGTTCCCAACAGACCTAATGTACCACCGGAAGAGCTATATGCCACACAGCTCTCACAGCTTCAAGAAATGGGATTTTTCGATACGCAAGAGAATATTCGTGCTCTGATAGCCACAGCAGGGAATGTCCATGCCGCAGTCGAGCGATTATTGGGAAATTCCAATTAA 1641 46.98 MGGDGDVEDPREANASDGVNAANANVNINIRCSSGTKFSVQINLDSTVGSFKAVLTDKSDVPADQQRLIYKGRILKDDQTLETYGLEADHTIHLVRGFAASSNTSSSPNVAGPNTIPSNPGDVDPNVGGPFGGSGLGSSLFPGLGSELGSSDGLFGAGLMDFEQVQQQLTQNPNVMRDIMNAPAVQNLLNNPDIMRNLIMNNPQMREIIDRNPELGHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTATGNTGNDSSNPFAALLGTQGADQTNRSTTNLETGSPAPNTNPLPNPWTSGGTGGAQTNTTRSIPTGDVRPQATPGLAGLGFPNLEGMASAMPDPAMLNQLMQNPAVSQMMQSLLSNPQYMNQILGLNPQLRSLLDSNTQLREMMQNPEFLRQLTSPDTMQQLLTLQQSLLSQLGQQQTTQDPSQTGGGPGSPNIPSREMLMNMFGELGAGSLGVPNRPNVPPEELYATQLSQLQEMGFFDTQENIRALIATAGNVHAAVERLLGNSN 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7716464 7720990 + Conep12aG0088600.1 Cone12ag0861 449705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0861 546 CDD UBA_PLICs 505 543 - -
Cone12ag0861 546 ProSiteProfiles Ubiquitin domain profile. 26 95 IPR000626 GO:0005515(InterPro)
Cone12ag0861 546 SMART CBM 372 402 IPR006636 -
Cone12ag0861 546 SMART CBM 152 189 IPR006636 -
Cone12ag0861 546 SMART CBM 202 241 IPR006636 -
Cone12ag0861 546 SMART CBM 406 441 IPR006636 -
Cone12ag0861 546 FunFam Ubiquitin domain-containing protein DSK2b 488 546 - -
Cone12ag0861 546 Gene3D - 14 109 - -
Cone12ag0861 546 PANTHER UBIQUILIN 21 543 IPR015496 GO:0005829(PANTHER)|GO:0006511(PANTHER)|GO:0031593(PANTHER)
Cone12ag0861 546 PRINTS Ubiquitin signature 57 77 IPR019956 -
Cone12ag0861 546 PRINTS Ubiquitin signature 78 99 IPR019956 -
Cone12ag0861 546 SMART ubq_7 26 97 IPR000626 GO:0005515(InterPro)
Cone12ag0861 546 FunFam Ubiquitin domain-containing protein DSK2b 199 255 - -
Cone12ag0861 546 Gene3D - 197 254 - -
Cone12ag0861 546 MobiDBLite consensus disorder prediction 102 123 - -
Cone12ag0861 546 SUPERFAMILY UBA-like 501 543 IPR009060 GO:0005515(InterPro)
Cone12ag0861 546 CDD Ubl_Dsk2p_like 31 98 - -
Cone12ag0861 546 MobiDBLite consensus disorder prediction 302 348 - -
Cone12ag0861 546 SUPERFAMILY Ubiquitin-like 16 112 IPR029071 -
Cone12ag0861 546 FunFam Ubiquitin domain-containing protein DSK2b 23 109 - -
Cone12ag0861 546 Pfam Ubiquitin family 28 96 IPR000626 GO:0005515(InterPro)
Cone12ag0861 546 MobiDBLite consensus disorder prediction 302 346 - -
Cone12ag0861 546 MobiDBLite consensus disorder prediction 451 476 - -
Cone12ag0861 546 MobiDBLite consensus disorder prediction 102 121 - -
Cone12ag0861 546 Gene3D - 487 546 - -
Cone12ag0861 546 SMART uba_6 505 543 IPR015940 -
Cone12ag0861 546 ProSitePatterns Ubiquitin domain signature. 52 77 IPR019954 -
Cone12ag0861 546 MobiDBLite consensus disorder prediction 451 470 - -
Cone12ag0861 546 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 500 544 IPR015940 -
Cone12ag0861 546 Pfam UBA/TS-N domain 505 541 IPR015940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0861 K04523 - - csv:101203166 718.768
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0861 Cone-Chr12:7716464 Cone7ag0594 Cone-Chr7:2849821 1.63E-06 dispersed
Cone12ag0861 Cone-Chr12:7716464 Cone12ag1271 Cone-Chr12:9734072 5.01E-123 wgd
Cone12ag0861 Cone-Chr12:7716464 Cone8ag0890 Cone-Chr8:8693574 1.36E-278 wgd
Cone12ag0861 Cone-Chr12:7716464 Cone8ag1325 Cone-Chr8:10728073 1.63E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1184 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0890 Cone12ag0861 . . . . . . . . . . . . . . . . . Cma16g01271 . . . . . . . . . . . . . . . . . . . Lsi07g01060 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39