Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0865 ATGAGATTCTTCAAGCTGGTTCAGCAGCAATTGAATCCGAGCGAGGACATGGAAACTTCCAAGATCTCTGACGAGGATTTGGATAGCCCCTTGGTTCATTTCTTGAAGAAGATGCGATTGCCGCGAAAGATAAAATCGTACAGTCTATCTCAATGGCGGATTATGATCAAGATGATACGGAGATTCCCTAATGCACATGGAGCTTTGATTTATCCTATTTATGGTCAAGGGGAACTGCCTCAAGCATTTTGTCGTCGTGCAGCTGTTAAAGGTATTGCGCATGCCAGTGATTGCGCTGCTTACAGACAAAGTAATGAGAACTATAAAGGTGTCAGATTAGCTTCGGGTCAGGATATATTCAGTCATCAATTGGTATTGGATCCATCACATACAATTTCTTTGCCATCAGCTTCATCTCCATCAAATCCTTTTAAAGAAAATCTTGTAGGTTTAAATTCGAGAGAAGTTAAAGGCAAGGTGGCCAGGGGAATATGCATTACAAGGCGTTCTATTATACGAGATGTAATGAATTGTGTGGTGGTGTATCCTCCTAGAACTTTGTTCCCTGAGCAGGTCACATCTGTTAGAGTTCTCCAGCTAGGTAGCAATTTGGCTGTTTGTCCTTCGGGCATGTTTGTGTTATACTTCTCTGCCCAATGTGATGATGACAATCAAGGAAAAGAGAGTGACAATGCCCAAGATGCAGAACCCATTTTACTCTGGAAGGCATTGTTTATTCAGGAGCTGAGTGAGGGTAAATTTGGATCAATTACTCCTACTCCACTGCCTGATGGGAATCTCAACTACAACGAAGTCTTAGATGCAACTTCAGAGTGTGTGTGTTTTAAGAGCTTGCATGCTTACGCTTTAATGAGGTTGGAGGTGCTCCTTGATTTTGAGAGATCTATGGCTTTGAATGCTTTCACTTCTCTCCCACCCTCTTCCGTTTAA 951 42.27 MRFFKLVQQQLNPSEDMETSKISDEDLDSPLVHFLKKMRLPRKIKSYSLSQWRIMIKMIRRFPNAHGALIYPIYGQGELPQAFCRRAAVKGIAHASDCAAYRQSNENYKGVRLASGQDIFSHQLVLDPSHTISLPSASSPSNPFKENLVGLNSREVKGKVARGICITRRSIIRDVMNCVVVYPPRTLFPEQVTSVRVLQLGSNLAVCPSGMFVLYFSAQCDDDNQGKESDNAQDAEPILLWKALFIQELSEGKFGSITPTPLPDGNLNYNEVLDATSECVCFKSLHAYALMRLEVLLDFERSMALNAFTSLPPSSV 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7732220 7736588 - Conep12aG0089000.1 Cone12ag0865 449709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0865 316 SUPERFAMILY FAD-linked reductases, C-terminal domain 157 244 - -
Cone12ag0865 316 Pfam GDP dissociation inhibitor 54 231 IPR018203 GO:0005092(InterPro)|GO:0007264(InterPro)
Cone12ag0865 316 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 1 68 - -
Cone12ag0865 316 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 158 249 - -
Cone12ag0865 316 Gene3D - 69 277 IPR036188 -
Cone12ag0865 316 PANTHER RAB GDP-DISSOCIATION INHIBITOR 1 278 IPR018203 GO:0005092(InterPro)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005829(PANTHER)|GO:0005968(PANTHER)|GO:0007264(InterPro)|GO:0016192(PANTHER)|GO:0018344(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0865 K23460 - - cit:102629900 298.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0865 Cone-Chr12:7732220 Cone8ag1022 Cone-Chr8:9489802 4.76E-08 dispersed
Cone12ag0865 Cone-Chr12:7732220 Cone8ag0894 Cone-Chr8:8708985 4.97E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1191 . . Bda04g00217 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0894 Cone12ag0865 . . . . . . Blo05g00677 . . . . Bpe06g00159 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008575 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 0 1 32