Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0866 ATGTACGGACCTAGGGGGGCAATGTTGGGGAGCGGGGGGGTATCTGATGGGTACGAGGTCGGCTCAAAGAGACAAAGAATGATGGAATCAAATCCCTACTTCGCAGTTAGCAGCAGCAGCGGTGCCTCAACTGGCTTCCAACCTTACGGCTACCATGGTGGTTTCCAACAACCTGCCTTTCCCGTGGTCCGCCTCAGAGGACTCCCCTTTGATTGCAGCGATCTTGAGATCTTCAAATTCTTTGCCGGACTAGACATAGTAGATGTCCTTCTAGTCAACAAGAATGGACGATTTTCGGGTGAGGCCTTTGTTGTCTTTGCGGGCCCCATGCAGGTTGAATTCGCCCTACAGAGAGACAGAAGGAACATGGGCCGGAGGTATGTAGAAGTCTTCAGGTGCAAGAAGCAGGATTATTACAATGCAGTTACTGCTGAAGTGAACTATGAGGGTATTTACGACAATGACTACCATCGAAGCCCGCCTCCAGCCCGAGCTAAGAGGTTTAGTGACAAGGACCAGTTGGAATACACCGAGATATTGAAGATGCGTGGTCTGCCATTCTCTGTGAAGAAGTCTCAGATTATGGAGTTTTTCGGAGAGTTTAGTCCGATTGAAGAGAGGATCCATATTGCTTGTCGTCCGGATGGTAAGGCTACAGGGGAAGCTTATGTGGAGTTTGCTTCTGCTGATGAGGCAAAGAGGGCGATGTGTAAGGATAAGATGATGATTGGGTCGAGGTATGTTGAGCTGTTTCCTTCCACTCCGGATGAAGCTAGACGAGCCGAGTCTAGGTCCAGGCAGTGA 804 49.88 MYGPRGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSSSSGASTGFQPYGYHGGFQQPAFPVVRLRGLPFDCSDLEIFKFFAGLDIVDVLLVNKNGRFSGEAFVVFAGPMQVEFALQRDRRNMGRRYVEVFRCKKQDYYNAVTAEVNYEGIYDNDYHRSPPPARAKRFSDKDQLEYTEILKMRGLPFSVKKSQIMEFFGEFSPIEERIHIACRPDGKATGEAYVEFASADEAKRAMCKDKMMIGSRYVELFPSTPDEARRAESRSRQ 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7738271 7740478 - Conep12aG0089100.1 Cone12ag0866 449710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0866 267 CDD RRM_hnRNPH_ESRPs_RBM12_like 62 131 - -
Cone12ag0866 267 SUPERFAMILY RNA-binding domain, RBD 52 140 IPR035979 GO:0003676(InterPro)
Cone12ag0866 267 Pfam RNA recognition motif 182 247 IPR000504 GO:0003723(InterPro)
Cone12ag0866 267 Pfam RNA recognition motif 64 124 IPR000504 GO:0003723(InterPro)
Cone12ag0866 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 255 IPR000504 GO:0003723(InterPro)
Cone12ag0866 267 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 25 266 IPR050666 GO:1990904(PANTHER)
Cone12ag0866 267 SUPERFAMILY RNA-binding domain, RBD 177 264 IPR035979 GO:0003676(InterPro)
Cone12ag0866 267 Gene3D - 58 144 IPR012677 -
Cone12ag0866 267 Gene3D - 164 267 IPR012677 -
Cone12ag0866 267 CDD RRM_hnRNPH_ESRPs_RBM12_like 179 251 - -
Cone12ag0866 267 SMART rrm1_1 62 131 IPR000504 GO:0003723(InterPro)
Cone12ag0866 267 SMART rrm1_1 179 251 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0866 K12898 - - rcu:8281310 472.241
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1492 Cone-Chr11:10554522 Cone12ag0866 Cone-Chr12:7738271 5.91E-69 dispersed
Cone12ag0866 Cone-Chr12:7738271 Cone1ag0449 Cone-Chr1:4105132 6.55E-51 dispersed
Cone12ag0866 Cone-Chr12:7738271 Cone8ag0895 Cone-Chr8:8713993 3.12E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1192 . . . . . . . Bma15g00888 . . Cma03g00623 Cma07g00385 Car03g00578 Car07g00337 . Cpe19g00897 Cpe10g00714 . . . . . . . . . . . . . . . Cone12ag0866 . . Lsi01g00530 . . . . Blo06g00274 . . Bpe10g00194 . . . . . Cmo07g00378 . . . . . . . . . . . . . . . . . . . . . . Chy02g00506 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005883 2 2 1 1 2 1 2 1 1 1 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 1 39