Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0868 ATGAAGGGAGGTAAATCGAAGGTTACCACCAGAAAGGCGGATACTAAGCTGAAGACAAAAAGTGCAGGAGCAGCTAAGAAAGGGAAAGCTGCCAAGGATCCGAATAAGCCGAAGAGACCTGCTAGCGCTTTCTTCGTTTTCATGGAGGAGTTCAGAAAGACGTACAAGAAAGAGCATCCTAATAACAAATCCGTCGCCGCTGTTGGAAAAGCTGGTGGGGACAAATGGAAGTCATTGTCAGAATCTGAAAAAGCTCCTTTTGTATCTAGGGCCGAGAAAAGGAAGACAGAGTACAACAAGACTATGCAGGCTTACAATAAGAGAATTGCTGAGGGAGGTAATGGAGCTGATGAAGATGAGTCGGACAAGTCAAAGTCTGAAGTGAATGATGAGGATGAAGAAGATGGTGAGAGTGGAGAGGAGGAAGATGATGATGAGTAG 441 45.12 MKGGKSKVTTRKADTKLKTKSAGAAKKGKAAKDPNKPKRPASAFFVFMEEFRKTYKKEHPNNKSVAAVGKAGGDKWKSLSESEKAPFVSRAEKRKTEYNKTMQAYNKRIAEGGNGADEDESDKSKSEVNDEDEEDGESGEEEDDDE 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7749914 7751526 + Conep12aG0089300.1 Cone12ag0868 449712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0868 146 CDD HMG-box_AtHMGB1-like 38 98 - -
Cone12ag0868 146 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Cone12ag0868 146 MobiDBLite consensus disorder prediction 57 146 - -
Cone12ag0868 146 Gene3D High mobility group box domain 20 115 IPR036910 -
Cone12ag0868 146 MobiDBLite consensus disorder prediction 76 101 - -
Cone12ag0868 146 MobiDBLite consensus disorder prediction 1 41 - -
Cone12ag0868 146 MobiDBLite consensus disorder prediction 7 36 - -
Cone12ag0868 146 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Cone12ag0868 146 Coils Coil 88 108 - -
Cone12ag0868 146 FunFam High mobility group B1 22 109 - -
Cone12ag0868 146 SMART hmgende2 36 107 IPR009071 -
Cone12ag0868 146 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 136 IPR031061 -
Cone12ag0868 146 MobiDBLite consensus disorder prediction 124 146 - -
Cone12ag0868 146 SUPERFAMILY HMG-box 28 109 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0868 K25507 - - csv:101203658 205.297
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0868 Cone-Chr12:7749914 Cone13ag1398 Cone-Chr13:10119860 1.56E-34 dispersed
Cone12ag0868 Cone-Chr12:7749914 Cone17ag1458 Cone-Chr17:9894432 5.36E-43 wgd
Cone12ag0868 Cone-Chr12:7749914 Cone20ag0017 Cone-Chr20:128072 2.23E-14 wgd
Cone12ag0868 Cone-Chr12:7749914 Cone4ag2024 Cone-Chr4:14068094 2.50E-44 wgd
Cone12ag0868 Cone-Chr12:7749914 Cone7ag1941 Cone-Chr7:12386493 1.96E-41 wgd
Cone12ag0868 Cone-Chr12:7749914 Cone8ag0896 Cone-Chr8:8722294 1.38E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1195 . . Bda04g00215 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0896 Cone12ag0868 . . . . . . Blo05g00676 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002005 3 3 2 2 2 0 4 1 0 2 2 1 3 2 2 3 0 5 2 1 2 2 2 2 2 2 2 2 1 2 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44486 None None None None Cone TR