Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0870 ATGACGGAATTAATTGAGATGCTTTGGTTGCAGCCTGGAGGGAATTCGGATGGTTTAAAATCAAGTGAAGTAGAACCACGTCTGGTATTCCATTATGGGATTCCGTCAGGTTCTACTAAGTTCGCTTATGATCCCATTCAAAAGATTCTTGCTCTTTCTACTAAGGATGGAAGGATAAAGTTATTTGGAAAGGATAACACTCAGGTTCTACTGGACTCTAAGGAGGCAGTGCCCAGCAAGTTTTTGACGTTCATTGAGAACCGGGGCTTCCTTCTTAACGTAACTTTGAAGAACAACATCGAGGTTTGGGACATTGAAAAGAAGGCGCTGTCTCATGTGCATGTTTTCGAAAAAGAAATAACATCTTTCGCGATCATGCAATGTAGCCCTTATATGTATGCAGGAGATTCTGGTGGTAACGTTTCAATTTTGAAGCTCGAGCAAGAACCGTGTAATGTACTTGAGATGAAATACACCATACCCCTATCTGCTTCACACGGACATTCAACTGAAATTGCTGAGGATACAATTGTAACCCATGTGCTACCCCAGCCTATGGCTGAAAGTAAAAGGGTGCTTATAATATTCAAGGATGGTCGAATGACCTTATGGGATATTCGAGAAAGCAAATCTATTTTTATCACAGGTGGTAATGATACAATGCTATCACAATATCAAGAAGCAAAGAAAGTGACTTCTGCATGTTGGGCATGCCCTTTTGGACATAAAGTTGTTGTTGGGTATAGCAATGGAGAGATTTCGATATGGAGCATTCTTTCTTCCCAAAATCCACACGTTGAAGCAGCAACAGAGAGTACCACTCATACTGCTCTATTTAAACTCAATCTCGGATATAAGTCAGAAAAAATACCTATTTCGTTTTTGAGGTGGGCTTATGCTGATGGGAAAGCAAGTCGACTCTATGTTACAGGGGCCGCTGACATGTCTACAAATTCGTTGCAGGTAATCTTATTGAATGAGCATACCGAATCTCGCACAATAAAGTTGGGGCTTCAGTTGCCTGAGCAGTGTATTGACATGGAAACCATTTCAAGCCCTAGTGATCAAAGCAAGCATAAGCAAGATTCTTTACTTTTGCTTGGCAAATCAGGACAAGTTTACGCTTATGATGATTGCTTGATTGAAAAATATCTCCTGCAATCCCAATCCAGATCGCCATTCTCACTCCCAAAGGAGGTCATGGTGAAGATGCCATTTGCCGACTCGAGCATCACTGTGGCAAAATTCATCACAAATGATTCCAGTGTGCTGGGCTCTTCAGAAGAGGATTACAATCTGCTGATTAAAAGTGTTCCTTCACTCCTTTTTCTGGAGACAAAAGGGAAGGATGGGAATATCTCAAATACAGCTCAATTTAGTGGATTTTCAAAGGTTGACAACTTGTACATAACTGGACATAGTAATGGAGCAATTAATTTCTGGGATGCATCATGTCCAATTTTTATCCCGGTTTTCTCATTACATCAACAGGGTGAGGATGATTATTCTTTAAGTGGAAGAGCGGTGACCGCTTTGTACTTTGATGGCAATTCTCGGCTTCTTGTTTCAGGAGATCATGGTGGAATGGTTCGCATCTTTAGATTTCGACCAGAACCATATGCTGCTGACAGTGGTTTTATGTCTTTCCAAGGAAGTTCAAAGAAACGGAACAATCACATCATCCTGAGTGTCAATCTCGTAAAAGTTGATGGTTCCATACTAGCCATGAATTTAAGCAGTAACTCAAGGCATCTTGCTGTTGGCTCTGATCAAGGATATGTCTCAGTAATTGATATGCAAGGGTACAATATAATATATCAAAGACATATTGCAAGTGAAATATGCATTGGAATCGTTGATTTGCAGTTTGATAACTGCTGGGTGCATGGTTTTGAAAAAAATATACTAGCTATTGCCACAAAAGATTCATCCATTTTTGCTCTTGATAGTGATACTGGAACCACACTAAATCCCAGCATTGTTCGTCCCAAGAAACCCTCTAGGGCGCTTCTCATGCAGATTTTGGACGGACAGAGTACAGCAATTAGAGGACCAAACACATCAGATGTTCTGGACTCGGGCAAAAGTAGTCTTGCTGTGGATTCTACACAAAAGCAGTTGTTGATGTTGTTATGTTCTGAGAAAGCTGTATACCTCTATTCCTTGTCCCATGCCATTCAGGGAATTAAGAAGGTGCACTGCAAGAAGAAATTTTCATCCTCTTTATGTTGCTGGGCCTCAACATTCAACAGTCCAACTGATGTCGGCCTTATGCTTCTTTTCAATACTGGAAAACTTGAAATAAGATCTATACCGGAGCTGTCTCTTATAAGAGAGACTTCTATAAGAGGTTTAACATATCCAGCTTCAAAGCCAAACTCATTACCAGATATTTCCATATGTTCTTCACGGGATGGAGATCTTATTGTGGCAAATGGTGATCAAGAAATTACGCTCGTTTCAGTATTGTTCCACAAGAAAGCATTCAGGCTTTTGGACTCTATCAGTCAGATCTATATGAAAGATTTGATGCCTTTACAAGAAGGGCATGTTACTATGCCAATCATTCATAAGGAAAAGAAAAAGGGTATATTTAGCTCAGTTATGAAAGAAATTACTGGCAGCAAAGCGAAGCCAGTGCCGGAAATGGAAACTGAAGATACTAGAGAATCCATTGAAGAACTATCAACAATCTTTTCAACTGTTAACTTCCAATGTGATATTGAAAACACAGAAAATAAAGATAACCTTGGTGTGGATGAAGATGAGACTGGCCTAGACATAGATGACATTGATCTTGACGATCCTAGAGAAAAGCCTAAAGAGCAAAATATGTTGGGTGCTCTTAATAAACAAAAATTGGCAAACAAGTTTAATGCGCTGAAAGGAAAATTGAAACAGATGAAGGTGAAGACTGAAAAGAAATCGCCCAAGGAAGAAGAGCAGCTAGACATCAAACCCAATGATAAGTCAGGTTCTGTCGATCAAATTAAGAGGAAATATGGGTTTTCATCATCTACTGAAGCAAGTGTTGCCAAGGTGACAGAAAGCAAGCTGCAAGAGAATATTGTGAAACTGCAGGGAATCAACCTAAGAGCAACAGATATGCAAGACAAAGCCAAGTCATTTTCATCAATGGCAAATGAATTGCTACGAACTGCTGAACATGGAAGACGTTAA 3180 39.91 MTELIEMLWLQPGGNSDGLKSSEVEPRLVFHYGIPSGSTKFAYDPIQKILALSTKDGRIKLFGKDNTQVLLDSKEAVPSKFLTFIENRGFLLNVTLKNNIEVWDIEKKALSHVHVFEKEITSFAIMQCSPYMYAGDSGGNVSILKLEQEPCNVLEMKYTIPLSASHGHSTEIAEDTIVTHVLPQPMAESKRVLIIFKDGRMTLWDIRESKSIFITGGNDTMLSQYQEAKKVTSACWACPFGHKVVVGYSNGEISIWSILSSQNPHVEAATESTTHTALFKLNLGYKSEKIPISFLRWAYADGKASRLYVTGAADMSTNSLQVILLNEHTESRTIKLGLQLPEQCIDMETISSPSDQSKHKQDSLLLLGKSGQVYAYDDCLIEKYLLQSQSRSPFSLPKEVMVKMPFADSSITVAKFITNDSSVLGSSEEDYNLLIKSVPSLLFLETKGKDGNISNTAQFSGFSKVDNLYITGHSNGAINFWDASCPIFIPVFSLHQQGEDDYSLSGRAVTALYFDGNSRLLVSGDHGGMVRIFRFRPEPYAADSGFMSFQGSSKKRNNHIILSVNLVKVDGSILAMNLSSNSRHLAVGSDQGYVSVIDMQGYNIIYQRHIASEICIGIVDLQFDNCWVHGFEKNILAIATKDSSIFALDSDTGTTLNPSIVRPKKPSRALLMQILDGQSTAIRGPNTSDVLDSGKSSLAVDSTQKQLLMLLCSEKAVYLYSLSHAIQGIKKVHCKKKFSSSLCCWASTFNSPTDVGLMLLFNTGKLEIRSIPELSLIRETSIRGLTYPASKPNSLPDISICSSRDGDLIVANGDQEITLVSVLFHKKAFRLLDSISQIYMKDLMPLQEGHVTMPIIHKEKKKGIFSSVMKEITGSKAKPVPEMETEDTRESIEELSTIFSTVNFQCDIENTENKDNLGVDEDETGLDIDDIDLDDPREKPKEQNMLGALNKQKLANKFNALKGKLKQMKVKTEKKSPKEEEQLDIKPNDKSGSVDQIKRKYGFSSSTEASVAKVTESKLQENIVKLQGINLRATDMQDKAKSFSSMANELLRTAEHGRR 1059
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7755393 7761665 - Conep12aG0089500.1 Cone12ag0870 449714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0870 1059 SUPERFAMILY WD40 repeat-like 39 605 IPR036322 GO:0005515(InterPro)
Cone12ag0870 1059 Coils Coil 951 971 - -
Cone12ag0870 1059 Pfam WD domain, G-beta repeat 503 533 IPR001680 GO:0005515(InterPro)
Cone12ag0870 1059 Gene3D - 541 827 IPR015943 GO:0005515(InterPro)
Cone12ag0870 1059 Gene3D - 293 540 IPR015943 GO:0005515(InterPro)
Cone12ag0870 1059 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 14 1055 - GO:0005096(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0017157(PANTHER)|GO:0019905(PANTHER)|GO:0045159(PANTHER)
Cone12ag0870 1059 Gene3D - 39 291 IPR015943 GO:0005515(InterPro)
Cone12ag0870 1059 Pfam Lethal giant larvae(Lgl) like, C-terminal 567 837 IPR013905 -
Cone12ag0870 1059 MobiDBLite consensus disorder prediction 968 996 - -
Cone12ag0870 1059 SUPERFAMILY WD40 repeat-like 566 823 IPR036322 GO:0005515(InterPro)
Cone12ag0870 1059 CDD R-SNARE_STXBP5_6 996 1052 - -
Cone12ag0870 1059 MobiDBLite consensus disorder prediction 914 940 - -
Cone12ag0870 1059 SMART WD40_4 106 145 IPR001680 GO:0005515(InterPro)
Cone12ag0870 1059 SMART WD40_4 218 257 IPR001680 GO:0005515(InterPro)
Cone12ag0870 1059 SMART WD40_4 23 63 IPR001680 GO:0005515(InterPro)
Cone12ag0870 1059 SMART WD40_4 497 534 IPR001680 GO:0005515(InterPro)
Cone12ag0870 1059 SMART WD40_4 563 598 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0870 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0870 Cone-Chr12:7755393 Cone19ag1399 Cone-Chr19:9198722 1.43E-85 dispersed
Cone12ag0870 Cone-Chr12:7755393 Cone8ag0899 Cone-Chr8:8730311 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1197 Blo04g00862 . . . Bpe15g00498 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0899 Cone12ag0870 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005820 1 5 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 39