Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0872 ATGATGGAGTGGGAAAAACCAGAGCAGCACCATTACCAGCAGCAACACAGGGAGGAGCTGGTAGTGGTGAACAACAATGGGAGTGGCGGAGTGAATTTGAACGGGAATGGAGGAAGCCTGTACGTGAAGGTGATGACCGATGAGCAATTGGAGACTCTTCGGAAGCAGATTGCGGTTTACGCTACGATTTGTGAGCAGCTCGTTGAGATGCATAAGACTCTTACTTCTCACCAAGATCTTGCCGGAATCAGGCTAGGCAGTCCTTACTGCGAACCCCTAATGATATCAAGCGGCCACAAAATCACTTCAAGACAACGTTGGACTCCAACCTCTGTCCAGCTTCAAATTCTCGAGAGAATATTCGATCAAGGAACAGGCACTCCAAGCAAGCAAAAGATCAAAGAGATAACCTCTGAACTAAGCCAACACGGACAAATCTCTGAAACTAACGTCTATAACTGGTTCCAGAATAGGCGGGCTCGGTCCAAAAGGAAGCAGCAAAATACGGCACCAAACAATGTGGAATCTGAAGTGGAGACAGATACTGAGTCGCCCAAGGATAAGAAGACTAAGCCACAAGAATTTCAATCTCAGCAAAACTCTGCTCCTCCTAGCGCTGATGATCTCTGTTTTCAAAGCCCTGAAATAAGTTCTGACCTTCATTTCTTGGATTCTCCGACCAATAAGGCGGAGACTATGTTTCTATCGAATGGAGGTTTAAAGCCCGGAAGAAGTTTGGGTCAAATGTCTTTCTATGATGGGCATGAGCATCTTGTTGGAAAGATGGAAGTCCCAGAAAGATATGGTCTTTATTCGAATGCAGACAACTATAATATGTCCGGATGA 846 45.63 MMEWEKPEQHHYQQQHREELVVVNNNGSGGVNLNGNGGSLYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTSHQDLAGIRLGSPYCEPLMISSGHKITSRQRWTPTSVQLQILERIFDQGTGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQQNTAPNNVESEVETDTESPKDKKTKPQEFQSQQNSAPPSADDLCFQSPEISSDLHFLDSPTNKAETMFLSNGGLKPGRSLGQMSFYDGHEHLVGKMEVPERYGLYSNADNYNMSG 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7779041 7781944 + Conep12aG0089800.1 Cone12ag0872 449716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0872 281 Gene3D - 105 171 - -
Cone12ag0872 281 ProSiteProfiles 'Homeobox' domain profile. 100 165 IPR001356 GO:0003677(InterPro)
Cone12ag0872 281 Pfam Homeodomain 104 164 IPR001356 GO:0003677(InterPro)
Cone12ag0872 281 SMART HOX_1 102 169 IPR001356 GO:0003677(InterPro)
Cone12ag0872 281 SUPERFAMILY Homeodomain-like 103 167 IPR009057 -
Cone12ag0872 281 PANTHER WUSCHEL-RELATED HOMEOBOX 13 29 280 IPR044559 GO:0003700(InterPro)
Cone12ag0872 281 CDD homeodomain 104 166 IPR001356 GO:0003677(InterPro)
Cone12ag0872 281 MobiDBLite consensus disorder prediction 179 193 - -
Cone12ag0872 281 MobiDBLite consensus disorder prediction 159 212 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0872 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0872 Cone-Chr12:7779041 Cone8ag0901 Cone-Chr8:8752098 1.72E-181 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1200 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0901 Cone12ag0872 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag0901 . 31 163 Wox Gene Family AT1G20710 58.1 1.6e-36 150.2
Cone12ag0872 . 32 164 Wox Gene Family AT1G20710 58.1 1.6e-36 150.2
Cone12ag0872 . 30 281 Wox Gene Family AT4G35550 55.3 6.3e-73 271.6
Cone8ag0901 . 1 280 Wox Gene Family AT4G35550 52.3 2.4e-72 269.6
Cone20ag0200 . 7 167 Wox Gene Family AT1G46480 65.9 4.0e-53 205.3
Cone17ag0854 . 7 167 Wox Gene Family AT1G46480 66.5 1.5e-52 203.4
Cone9ag0982 . 1 141 Wox Gene Family AT5G45980 56.7 1.0e-40 164.9
Cone9ag0982 . 1 126 Wox Gene Family AT2G33880 77.2 3.0e-47 186.8
Cone20ag0200 . 7 167 Wox Gene Family AT1G46480 65.9 4.0e-53 205.3
Cone17ag0854 . 7 167 Wox Gene Family AT1G46480 66.5 1.5e-52 203.4
Cone9ag0982 . 1 141 Wox Gene Family AT5G45980 56.7 1.0e-40 164.9
Cone9ag0982 . 1 126 Wox Gene Family AT2G33880 77.2 3.0e-47 186.8
Cone8ag0901 . 31 163 Wox Gene Family AT1G20710 58.1 1.6e-36 150.2
Cone12ag0872 . 32 164 Wox Gene Family AT1G20710 58.1 1.6e-36 150.2
Cone12ag0872 . 30 281 Wox Gene Family AT4G35550 55.3 6.3e-73 271.6
Cone8ag0901 . 1 280 Wox Gene Family AT4G35550 52.3 2.4e-72 269.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44487 PF13456 RVT_3 5.50E-29 CL0219 Cone TF