Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0872 ATGATGGAGTGGGAAAAACCAGAGCAGCACCATTACCAGCAGCAACACAGGGAGGAGCTGGTAGTGGTGAACAACAATGGGAGTGGCGGAGTGAATTTGAACGGGAATGGAGGAAGCCTGTACGTGAAGGTGATGACCGATGAGCAATTGGAGACTCTTCGGAAGCAGATTGCGGTTTACGCTACGATTTGTGAGCAGCTCGTTGAGATGCATAAGACTCTTACTTCTCACCAAGATCTTGCCGGAATCAGGCTAGGCAGTCCTTACTGCGAACCCCTAATGATATCAAGCGGCCACAAAATCACTTCAAGACAACGTTGGACTCCAACCTCTGTCCAGCTTCAAATTCTCGAGAGAATATTCGATCAAGGAACAGGCACTCCAAGCAAGCAAAAGATCAAAGAGATAACCTCTGAACTAAGCCAACACGGACAAATCTCTGAAACTAACGTCTATAACTGGTTCCAGAATAGGCGGGCTCGGTCCAAAAGGAAGCAGCAAAATACGGCACCAAACAATGTGGAATCTGAAGTGGAGACAGATACTGAGTCGCCCAAGGATAAGAAGACTAAGCCACAAGAATTTCAATCTCAGCAAAACTCTGCTCCTCCTAGCGCTGATGATCTCTGTTTTCAAAGCCCTGAAATAAGTTCTGACCTTCATTTCTTGGATTCTCCGACCAATAAGGCGGAGACTATGTTTCTATCGAATGGAGGTTTAAAGCCCGGAAGAAGTTTGGGTCAAATGTCTTTCTATGATGGGCATGAGCATCTTGTTGGAAAGATGGAAGTCCCAGAAAGATATGGTCTTTATTCGAATGCAGACAACTATAATATGTCCGGATGA 846 45.63 MMEWEKPEQHHYQQQHREELVVVNNNGSGGVNLNGNGGSLYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTSHQDLAGIRLGSPYCEPLMISSGHKITSRQRWTPTSVQLQILERIFDQGTGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQQNTAPNNVESEVETDTESPKDKKTKPQEFQSQQNSAPPSADDLCFQSPEISSDLHFLDSPTNKAETMFLSNGGLKPGRSLGQMSFYDGHEHLVGKMEVPERYGLYSNADNYNMSG 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7779041 7781944 + Conep12aG0089800.1 Cone12ag0872 449716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0872 281 Gene3D - 105 171 - -
Cone12ag0872 281 ProSiteProfiles 'Homeobox' domain profile. 100 165 IPR001356 GO:0003677(InterPro)
Cone12ag0872 281 Pfam Homeodomain 104 164 IPR001356 GO:0003677(InterPro)
Cone12ag0872 281 SMART HOX_1 102 169 IPR001356 GO:0003677(InterPro)
Cone12ag0872 281 SUPERFAMILY Homeodomain-like 103 167 IPR009057 -
Cone12ag0872 281 PANTHER WUSCHEL-RELATED HOMEOBOX 13 29 280 IPR044559 GO:0003700(InterPro)
Cone12ag0872 281 CDD homeodomain 104 166 IPR001356 GO:0003677(InterPro)
Cone12ag0872 281 MobiDBLite consensus disorder prediction 179 193 - -
Cone12ag0872 281 MobiDBLite consensus disorder prediction 159 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0872 Cone-Chr12:7779041 Cone8ag0901 Cone-Chr8:8752098 1.72E-181 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44487 PF13456 RVT_3 5.50E-29 CL0219 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0872 - - - 0.0