Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0874 ATGGAAATTATCAAGCTGTTGCCCGGGTCTGTTCGCAGTGCAGTGCGTTCCGGCATTATCATCTTTGACTTGTCAAGGGTCGTGGAAGAGCTTGTTTTTAACAGCTTGGATGCTGGTGCAACTAAAATCTCAGTTTTAATTGGTCTTGGGACCTCCTACATTAAAGTAGTGGATGATGGACTTGGCATTACTCGGGATGGACTAGTCTTGCTGGGAGAAAGATACGTTACATCAAAGTTCCATGATCCAGCTGATAAGGACACTCCAAGCAAGAGCTTGGGTTTTCGAGGAGAAGCTTTGGCTTCCATTTCAGATATAGCATTGTTAGAAATTATAACAAAAGCTTGTGGGAGGCCAAATGGCTATCGTAAAGTCATGAAGGGTTGCAACTGCTTGTATCTTGGAATTGACAATGACAGGAGAGATGTAGGTACAACAGTTGTTGTTCGTGATTTGTTTTACAATCAACCAGTTCGGAGAAACATTATGCAATCCAGCCCCAAGAAGGTTTTCCACGCAATCAAGAAATGCATATTACATATTGCCATTGCGCACTCAAAGGTTTCCTTCAGAGTTATCGATAGTGAGAGCGAGGAAGAGCTTCTTCACACGCATCCTTCTTCATCTCCTTTGCCACTTTTGGGAAATAGCTTTGGGGCTGAGTTATCCAGCTCCCTTCAGAAGTTAACTGTTGATAATGGTTCCTTTAAGCTTTCAGGCTACATATCTGGTCCTCTTGATAATTTCAGGACTAAGGCTATTCAATACTTCTATATTAATTCACGGTTCATTTGCAAAGGTCCAATTCACAAACTGCTGAATCAATTGGCTACTGGTTTTGAATGCCTGGATCCACAGATAGCTGATAACAGATTTCAAACCAGGAAGCGAAGCAGGCCTCAAGCAGCTCCGGCTTATATCTTAAATTTAGATTGTCCTACATCTTTTTATGATCTAACCTTTGACTCATCCAAGACACATGTTCAATTCAAGGACTGGTCACCAGTGCTTACTTTCATTGAGAGGGCCATTAAAAAAATTTGGAAGAAGAATACCACCTGGGAAGGAGAAACTCTGAGTCATGCAGCTGACGTAATGGGACAAGATCATGTGTGGGAGGGAGAAGAAAGCATCAAATCAATAGAATTTGAAAATGTGCGACCTCTAAAATCAAAGTGCAGACTGGAGAACCATCGGGCATCTCATCATGACATCTTTCCCCCTTTAGAGATGCTAAACAGAGATGATGACTGTTTGTTTCCTAGGGAACATGTTAATCCGTTTGGATACTTGCAAAAGAATATTGTAGAACTGAAGGAACAACCAGTGAAGACAGGATGTAACCAGAGTAGATGTTTTTCGCAGTCACTCAATTGTCCCCTTTCCAAATGCGTGACTTCAGGAACCCAAAAACATTACAATCATCTGGGGACACTTTATGATGATCGTCCGTTGGGAGAAGATTATGTATCAGAGGATAGATTCACTGTTTCAGAAAGGTGCAGTGAAGATGTGGAGGAGACTATCTTAAATTCAGTGTGGGAAGATCAATCTCTTAAACTTCATTTTGATACGATTAACACGTCAAATGGGAGTATTTCATCAAGATACTTACATGAAATTAACGATGATACCCATATCAGCAGGGGTGTTAAGAAACCATTACTGATGAGTTGCTCCTCACAGGGAGGCTTTTCCCTTGAGAGATCCTTACTTGTAGATGGTGAAGGACTTAATAATGAAAACGTTGATCTCAGGAGAACCAGATTGCAGTCCATTCCAAGAGTAATAACAAACTGTGGTATATCTATAGATAATAATTTTCAGGCAAAAGATCTGATGAAGTCTGTAACATCATATGAAGATCAATTTGATGAAGAAAATAGTCCTCCATCAGACTCGGTCGCACTGAATTTTGGCTCCATTTGTGAGACCTCAAATTCTAAATGGTACACAGATAATTCAGATTCTTTGTTATACACAGACTGGGATGCTGAAAGTTACTGTAACAATGGACTTGAAAAGTGTTGGCTAACTGGCAAGAGGTCTCTCAATGGGGATTTGATGGTTAGCAAAGAAAGGGACTGCACACTATACTCTGATATCATGTTGAAGAGTCCATTTAAAGATAACTGCACCCCAAATTACATGAAAAGTGGACTTCTTACTGATGATTTTTATGATACTCAAGATTTAGGTCCTTCAGTGGAAGAACTCGGTCTATGTAATAAAAATTCTTCTGAATGTCATGATTTTTTAACGAGTGAGGCAGAGAATTTCTATTGTACCCCATTTAAAAGAGATCATGTGAATCTTGACCCTCAGAGCAGCCCGAAGGACTGTCATAGAAATCAAGGTTGCAAAGATTCTCATGTTCCTATAGAGAGATCAAGGAGAAGCCATTCAGCTCCTCCTTTCTACCAAAGGAAGAGGAAGATCATTTCCCTGGATCTATCCGAGCCGGAATCAGTAAAACGTGATGCACAGATTTTCCCTGATGCTCAACCTTATCCAGAACCTGGCGAGTTGAAGCATTCCAAACACTCTTCAAGGATGAGCCAAGTATATTTCAAGCAAGACCGTATGGAGGCTACAGATTCATTATTACACACCAGACCCAATATGAAAAAGTTGCCGGACATTGTAAAAGAAATGAAGGAGACTCATGAAGTAGAACTGTTTGGGAAGACCCAAGCCTTGGATGTTCAAGATACTGCCCCTGATAAAGTTCTCTCAAAAGAAACTCAAGACTCGATGGATTTATGGACCAAATGGCAGAATTGCTGTCCTCAAATTGCAAGAAAAAGTAAATCACATGATGATGACGATCAGATTCAAATCCTCGACATCTCTTCGGGATTTCTATGCCTTTTCGGTGATTCATTAGTTCCGAAATCCATCAACAGACAATGCCTAGAGGGAGCTAAAGTTCTGCCACAGGTGGACAAGAAATTTATTCCAGTTGTTGCTGGTAGAACACTGGCTGTTATTGATCAGCATGCTGCAGATGAAAGGATTCGACTAGAAGAACTCCGTCAAAAGATATTATCTGGAGAAGCAAGAACTACCACCTATCTAGATGCTGAACAAGAGTTGATACTTCCAGAGATTGGCAGTCAGTTACTGCAAAATTATTCTGAACAAATAAAAGAGTGGGGTTGGATCTGTAACATTCATACGCAAGATTCTAAGTCTTTCCAGAGGAATTTGAATATCCTCCATAGGCAGGAAGCAGTAATCACACTACTCGCGGTGCCCTGCATTTTAGGTGTCAATTTATCTGATGTAGATCTTTTGGAGTTTATCCATCAGCTTGCTGATACAGATGGATCATCAACAATGCCCCAGTCTGTTCTTCGGGTCCTCAATTCGAAAGCATGTAGAGGTGCAATTATGTTTGGCGATTCTTTGCTTCCTTCGGAATGTTCTCTCATAGTTGAAGAGCTAAAAAGGACTGCACTTTGTTTCCAATGTGCTCATGGGCGACCAACAGCTGCTCCTCTTGTCGACCTGGAGGTATTGCGTAAGGAGATAAGTAAGCTACCATTGTTAAATGATAATTCAGACGAGTCATTTCATGGATTACAGAAACATGGACTGAGTCTCGTAAGGACGGCACAACGTTTAAGCTTGGCTAGAAGTTAG 3645 40.85 MEIIKLLPGSVRSAVRSGIIIFDLSRVVEELVFNSLDAGATKISVLIGLGTSYIKVVDDGLGITRDGLVLLGERYVTSKFHDPADKDTPSKSLGFRGEALASISDIALLEIITKACGRPNGYRKVMKGCNCLYLGIDNDRRDVGTTVVVRDLFYNQPVRRNIMQSSPKKVFHAIKKCILHIAIAHSKVSFRVIDSESEEELLHTHPSSSPLPLLGNSFGAELSSSLQKLTVDNGSFKLSGYISGPLDNFRTKAIQYFYINSRFICKGPIHKLLNQLATGFECLDPQIADNRFQTRKRSRPQAAPAYILNLDCPTSFYDLTFDSSKTHVQFKDWSPVLTFIERAIKKIWKKNTTWEGETLSHAADVMGQDHVWEGEESIKSIEFENVRPLKSKCRLENHRASHHDIFPPLEMLNRDDDCLFPREHVNPFGYLQKNIVELKEQPVKTGCNQSRCFSQSLNCPLSKCVTSGTQKHYNHLGTLYDDRPLGEDYVSEDRFTVSERCSEDVEETILNSVWEDQSLKLHFDTINTSNGSISSRYLHEINDDTHISRGVKKPLLMSCSSQGGFSLERSLLVDGEGLNNENVDLRRTRLQSIPRVITNCGISIDNNFQAKDLMKSVTSYEDQFDEENSPPSDSVALNFGSICETSNSKWYTDNSDSLLYTDWDAESYCNNGLEKCWLTGKRSLNGDLMVSKERDCTLYSDIMLKSPFKDNCTPNYMKSGLLTDDFYDTQDLGPSVEELGLCNKNSSECHDFLTSEAENFYCTPFKRDHVNLDPQSSPKDCHRNQGCKDSHVPIERSRRSHSAPPFYQRKRKIISLDLSEPESVKRDAQIFPDAQPYPEPGELKHSKHSSRMSQVYFKQDRMEATDSLLHTRPNMKKLPDIVKEMKETHEVELFGKTQALDVQDTAPDKVLSKETQDSMDLWTKWQNCCPQIARKSKSHDDDDQIQILDISSGFLCLFGDSLVPKSINRQCLEGAKVLPQVDKKFIPVVAGRTLAVIDQHAADERIRLEELRQKILSGEARTTTYLDAEQELILPEIGSQLLQNYSEQIKEWGWICNIHTQDSKSFQRNLNILHRQEAVITLLAVPCILGVNLSDVDLLEFIHQLADTDGSSTMPQSVLRVLNSKACRGAIMFGDSLLPSECSLIVEELKRTALCFQCAHGRPTAAPLVDLEVLRKEISKLPLLNDNSDESFHGLQKHGLSLVRTAQRLSLARS 1214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7796985 7806808 - Conep12aG0090000.1 Cone12ag0874 449718

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0874 1214 NCBIfam DNA mismatch repair endonuclease MutL 4 356 IPR002099 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone12ag0874 1214 Gene3D - 1021 1132 IPR042121 -
Cone12ag0874 1214 Gene3D - 217 354 IPR014721 -
Cone12ag0874 1214 ProSitePatterns DNA mismatch repair proteins mutL / hexB / PMS1 signature. 94 100 IPR014762 -
Cone12ag0874 1214 FunFam MUTL protein homolog 3 1021 1132 - -
Cone12ag0874 1214 MobiDBLite consensus disorder prediction 774 805 - -
Cone12ag0874 1214 SUPERFAMILY DNA mismatch repair protein MutL 976 1168 IPR037198 -
Cone12ag0874 1214 Pfam MutL C terminal dimerisation domain 980 1137 IPR014790 GO:0005524(InterPro)|GO:0006298(InterPro)
Cone12ag0874 1214 SMART DNA_mis_repair_2 214 349 IPR013507 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone12ag0874 1214 SUPERFAMILY Ribosomal protein S5 domain 2-like 200 349 IPR020568 -
Cone12ag0874 1214 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 25 120 - -
Cone12ag0874 1214 MobiDBLite consensus disorder prediction 774 798 - -
Cone12ag0874 1214 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 4 1176 IPR038973 GO:0006298(PANTHER)|GO:0006298(InterPro)|GO:0016887(PANTHER)|GO:0016887(InterPro)|GO:0032300(PANTHER)|GO:0032300(InterPro)|GO:0140664(InterPro)
Cone12ag0874 1214 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 20 201 IPR036890 -
Cone12ag0874 1214 Gene3D - 980 1166 IPR042120 -
Cone12ag0874 1214 Gene3D - 3 208 IPR036890 -
Cone12ag0874 1214 SMART MutL_C_2 977 1137 IPR014790 GO:0005524(InterPro)|GO:0006298(InterPro)
Cone12ag0874 1214 FunFam DNA mismatch repair endonuclease MutL 1 210 - -
Cone12ag0874 1214 Pfam DNA mismatch repair protein, C-terminal domain 217 347 IPR013507 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0874 K08739 - - vvi:100253902 1047.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0874 Cone-Chr12:7796985 Cone17ag0722 Cone-Chr17:5167494 3.00E-07 dispersed
Cone12ag0874 Cone-Chr12:7796985 Cone17ag0515 Cone-Chr17:2553739 2.32E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1201 . . . . . . . Bma15g00886 . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0874 . . . . . . . Blo06g00254 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01046 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004629 1 6 2 1 0 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 3 0 1 40