Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0877 ATGATGAAATTTTTCATGGGTATAGTCTGGTTTTTCCTCTTGATGGTTTTATGCAGTGGGGATAGCTCAAATGTAACTAGTACCAGACCCGATCTCGTAAATATCGGTGCTTTATTCTCGTATAGTTCTATGATCGGCCGAGTCGCAAAAATTGCAGTAGATGCTGCAGTGGACGATGTGAATTCCGATCCGAACATTCTTCATGGAACCAAGATCAAACTCACTTATCAGGATTCAAATTACAGTGGATTCCTAGGCATTGTTCAGTCTCTGAAGTTCATGGAGTTGAACACTATGGCCATAATCGGCCCGCAAAATTCTGTAACCGCCCATATCATATCTCATATTGCAAACGAGCTCCAAGTCCCTCTAGTATCCTTTTCCGCTACAGACCCCACTCTATCTTCACTCCAATTCCCTTTCTTTATCCGAACATCCCAAAACGACCTCTTCCAAATGGCTGCTATAGCGGATATAGTCAGTTACTATGAATGGAAAGAAGTCATAGCAATCTATGTTGATGATGATGGGGGTAGAAACGGAATTACTGCCTTAGGAGACAAGCTTGCGGAAAAACGTTGTAAGATCTCTTACAAGGCGCCTTTAAGACCTGATGCTACTAAAGATGAGGTCACTGATTTACTGGTTAAATTGACACTAACCGAATCTCGAATTTTCATTCTCAACACTTATGAAACTACAGCTTTAGTGGTTTTAAAAGAGGCGAGGTATCTTGGCATGATGGGGCCTGGAAATGTTTGGATTGTTGATAGTTATCTCTCTACTCTACTTGATACAAAATCCCCCCTTCCTGCGGATGCTATTGATGATATGCAAGGTATAATTACTTTGAGGATTTATACGCCGGATTCCGAACTTAAAAGGAAATTTGTTTCTAGGTGGCCTAATTTGACTCGTGGAAAGGAAGCTAGTGGCCCACTTGGGTTAAGTACTTATGGTTTATATGCTTATGACACGGTTTGGTTACTTGGTCACGCGATTGATGCATTTTTCAATCAAGGGGGGAAAGTTACATTTTCAAACTATTCAAAATTAACTGAAAAAGATCAGGGAAAGTTACATCTTGACTCTATGAACATCTTCGATGGAGGAAATTTGTTGCTAAAGAACATTCTAGATGTCAATATGACAGGGGTAACGGGCCCGGTCAAGTTTACTTCAGGTAGGAATCTTGTTTTCCCGGCTTATGAAATCCTGAATGTAATAGGAACCGGAGTTAGAACGGTTGGTTATTGGTCTAATTATTCGGGATTGTCCATTTTACCCCCACAAGTGCCTTACTCAAACCCACCTAATCTTTCAAGTTCGAATCAAACACTATATACTGTGATTTGGCCAGGACAACCGACAGAGAAGCCTCGTGGTTGGGTTTTTCCAAACAATGGGAGGCATTTGAATATTGGAGTTCCCAAAAGAGTTAGTTACCTTGAATTTGTCTCTCAAGTAAAAGGCACGGACTTATTCACGGGTTATTGTGTTGATGTGTTTGCTGCTGCTGTCAACTTGTTGCCTTATGCCGTTCCCTATAAGTTGATCCCGTTTGGAGATGGTCGGAAGAACCCAAGTGGAACTGAGCTTGTTCGTTTGATCACAGCCGGGGTTTTTGATGCTGCTATAGGTGATATTGCAATTATAACAGAGCGGACAAAGTTGGTGGATTTTACTCAACCGTATATTGAGTCAGGCCTAGTAGTTGTTGCCCCGATTAAGAAGTTGAATTCCAATGCCTGGGCGTTTTTGAGACCGTTCACACCCACAATGTGGGGTGTAACTGCCTCATTTTTTGTTATTGTAGGAGCGGTGGTTTGGATTTTAGAGCATAGAACGAACGATGAATTCCGGGGCCCGCCTAAGAAACAACTCATCACTATCCTCTGGTTTAGCTTTTCTACCTGGTTCTTTGCTCATAGAGAAAGTACGGTCAGCACTCTAGGCCGGCTAGTTCTAATTATATGGCTCTTTGTAGTCCTTATAATAAACTCGAGCTATGTAGCAAGCTTGACCTCGATCCTTACGGTCCAACAGCTTTCTTCTCCCGTTAAAGGCATTGAAACGTTAATGTCAAGCAAAGATCCCGTTGGTTATCAACAGGGTTCATTTGCCCGGAACTATCTGATTGAAGAACTCGGTATTAATGAGTCCCGACTCGTTCCTCTCATCTCCCCGGAAGATTATGCTAAAGCTCTGAAAGCAGGGCCTGGAAAAGGCGGTGTTTCTGCTATTGTGGATGAACGTGCATATATAGAGCTCTTCCTTTCGACTCAATGTGAATTCAGTATTATCGGTCAAGAGTTCACTAAAAACGGGTGGGGATTCGCTTTTCCCAGAGACACGCCTTTAGCAGTCGACATGTCAACTGCAATCCTCAAGCTATCCGAAAATGGAGATCTCCAACGGATCCACGACAAATGGCTAATGAGAAGTGCTTGCACTTCACAAACGACCAAGTTTGAGATAGACCAGCTTCAACTAAAGAGCTTTTGGGGTCTCTACGTGGTATGTGGGTTAGCTTGCTTGCTTGCTCTCTTTGTGTACTTCGTCCTTGTGATCCGCCAGTACAACAAGCATTACACCGAAGAACTCGAGAGCAATGGTCAGAGCTCTCGGTCTGGACACCTTCAGAAATTCCTGTCGTTTGCTGATGAAAAGGCTGAGGTTGTGAAAGGACGATCCAAAAGAAGGAAAATGGAGAGGGACTCTAATAGAGGGATGAGCGGAAGTAATCTAACTGATACTTCGACGGGTCGGTTGGATTCCGAAAGTAATCTAGCTGATACTTCAATGATAAGGCGCTTAGATTCCTCTCATAGTATGGGTGGTACCAGTAGCGATGCTTGA 2859 42.99 MMKFFMGIVWFFLLMVLCSGDSSNVTSTRPDLVNIGALFSYSSMIGRVAKIAVDAAVDDVNSDPNILHGTKIKLTYQDSNYSGFLGIVQSLKFMELNTMAIIGPQNSVTAHIISHIANELQVPLVSFSATDPTLSSLQFPFFIRTSQNDLFQMAAIADIVSYYEWKEVIAIYVDDDGGRNGITALGDKLAEKRCKISYKAPLRPDATKDEVTDLLVKLTLTESRIFILNTYETTALVVLKEARYLGMMGPGNVWIVDSYLSTLLDTKSPLPADAIDDMQGIITLRIYTPDSELKRKFVSRWPNLTRGKEASGPLGLSTYGLYAYDTVWLLGHAIDAFFNQGGKVTFSNYSKLTEKDQGKLHLDSMNIFDGGNLLLKNILDVNMTGVTGPVKFTSGRNLVFPAYEILNVIGTGVRTVGYWSNYSGLSILPPQVPYSNPPNLSSSNQTLYTVIWPGQPTEKPRGWVFPNNGRHLNIGVPKRVSYLEFVSQVKGTDLFTGYCVDVFAAAVNLLPYAVPYKLIPFGDGRKNPSGTELVRLITAGVFDAAIGDIAIITERTKLVDFTQPYIESGLVVVAPIKKLNSNAWAFLRPFTPTMWGVTASFFVIVGAVVWILEHRTNDEFRGPPKKQLITILWFSFSTWFFAHRESTVSTLGRLVLIIWLFVVLIINSSYVASLTSILTVQQLSSPVKGIETLMSSKDPVGYQQGSFARNYLIEELGINESRLVPLISPEDYAKALKAGPGKGGVSAIVDERAYIELFLSTQCEFSIIGQEFTKNGWGFAFPRDTPLAVDMSTAILKLSENGDLQRIHDKWLMRSACTSQTTKFEIDQLQLKSFWGLYVVCGLACLLALFVYFVLVIRQYNKHYTEELESNGQSSRSGHLQKFLSFADEKAEVVKGRSKRRKMERDSNRGMSGSNLTDTSTGRLDSESNLADTSMIRRLDSSHSMGGTSSDA 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7816693 7820899 + Conep12aG0090300.1 Cone12ag0877 449721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0877 952 Gene3D - 782 812 - -
Cone12ag0877 952 SUPERFAMILY Periplasmic binding protein-like II 446 814 - -
Cone12ag0877 952 SMART GluR_14 471 814 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone12ag0877 952 Gene3D - 583 708 - -
Cone12ag0877 952 FunFam Glutamate receptor 467 583 - -
Cone12ag0877 952 Gene3D - 743 781 - -
Cone12ag0877 952 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 885 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cone12ag0877 952 PIRSF IGluLR_plant 1 950 IPR017103 -
Cone12ag0877 952 Gene3D - 51 400 - -
Cone12ag0877 952 FunFam Glutamate receptor 709 816 - -
Cone12ag0877 952 Gene3D - 148 425 - -
Cone12ag0877 952 SUPERFAMILY Periplasmic binding protein-like I 28 463 IPR028082 -
Cone12ag0877 952 CDD GluR_Plant 472 812 - -
Cone12ag0877 952 MobiDBLite consensus disorder prediction 909 952 - -
Cone12ag0877 952 MobiDBLite consensus disorder prediction 894 908 - -
Cone12ag0877 952 FunFam Glutamate receptor 583 713 - -
Cone12ag0877 952 Pfam Receptor family ligand binding region 50 410 IPR001828 -
Cone12ag0877 952 Pfam Bacterial extracellular solute-binding proteins, family 3 531 592 IPR001638 -
Cone12ag0877 952 MobiDBLite consensus disorder prediction 894 952 - -
Cone12ag0877 952 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone12ag0877 952 FunFam Glutamate receptor 148 299 - -
Cone12ag0877 952 Gene3D - 464 582 - -
Cone12ag0877 952 CDD PBP1_GABAb_receptor_plant 34 426 IPR044440 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1211 Cone-Chr10:8985690 Cone12ag0877 Cone-Chr12:7816693 0 dispersed
Cone12ag0877 Cone-Chr12:7816693 Cone3ag1339 Cone-Chr3:32373385 1.36E-300 dispersed
Cone7ag1944 Cone-Chr7:12396614 Cone12ag0877 Cone-Chr12:7816693 8.86E-89 transposed
Cone12ag0877 Cone-Chr12:7816693 Cone12ag1294 Cone-Chr12:9853275 0 wgd
Cone12ag0877 Cone-Chr12:7816693 Cone4ag2030 Cone-Chr4:14092024 7.71E-304 wgd
Cone12ag0877 Cone-Chr12:7816693 Cone7ag1943 Cone-Chr7:12394537 5.11E-84 wgd
Cone12ag0877 Cone-Chr12:7816693 Cone8ag0908 Cone-Chr8:8803388 0 wgd
Cone12ag0877 Cone-Chr12:7816693 Cone8ag1337 Cone-Chr8:10774452 2.81E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0877 K05387 - csv:101213408 1332.78