Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0881 ATGACTCGCTCTACCAGCATGAGAAATCTCCTCGCAACCACCACAAACAAATCCAGCTCGCAACCGGTGGCACCACCGCCAGAGCCGGTGGCCTTGGAATCAGACTTCGTCGTCATACTCGCCGCCCTACTCTGTGCCCTAATCTGCATGGTCGGCCTAATAGCTGTCGCTCGCTGCGCGTGGCTCCGCCGTGGCGCGGGTGGAACCTCCAGCTCCGCCAGTCACTCCTCCGCCAACAAAGGCCTGAAAAAGAAGGTCCTCCAGGCTCTACCTAAATTCACCTACTCCGCCACCGAAGCGAAGACGAAATACGCCTCGGAATGCTCGATTTGCTTGGGCGATTTTGCAGAAGGAGATGAGATCCGTGTTCTCCCTCAGTGCGGTCACTGTTTCCACTCAGGATGCATCGACACGTGGCTCGCATCTCACTCCTCGTGTCCTTCCTGCCGTCAGATTCTCGTCGTTGCCACTCGCTGCCAGAAGTGCGGTCAGTTTCCAAACTCCGGCGCCGGAGCTGGATGTGCCGAAACGGAGCTCAAGGCTAGGGAAGAGAATTCCTCCTCCTCTTCTTCTAATCACTCTGGTTTTCTGCCTTGA 597 56.95 MTRSTSMRNLLATTTNKSSSQPVAPPPEPVALESDFVVILAALLCALICMVGLIAVARCAWLRRGAGGTSSSASHSSANKGLKKKVLQALPKFTYSATEAKTKYASECSICLGDFAEGDEIRVLPQCGHCFHSGCIDTWLASHSSCPSCRQILVVATRCQKCGQFPNSGAGAGCAETELKAREENSSSSSSNHSGFLP 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7847918 7848996 + Conep12aG0090700.1 Cone12ag0881 449725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0881 198 CDD RING-H2_EL5-like 107 150 - -
Cone12ag0881 198 FunFam E3 ubiquitin-protein ligase ATL6 70 156 - -
Cone12ag0881 198 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Cone12ag0881 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 154 IPR013083 -
Cone12ag0881 198 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 20 180 IPR052788 -
Cone12ag0881 198 Pfam Ring finger domain 107 150 IPR001841 -
Cone12ag0881 198 SMART ring_2 108 149 IPR001841 -
Cone12ag0881 198 SUPERFAMILY RING/U-box 89 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0881 Cone-Chr12:7847918 Cone19ag1449 Cone-Chr19:9420188 1.18E-25 dispersed
Cone12ag0881 Cone-Chr12:7847918 Cone17ag1471 Cone-Chr17:9949472 1.11E-56 wgd
Cone12ag0881 Cone-Chr12:7847918 Cone20ag0007 Cone-Chr20:67139 1.71E-46 wgd
Cone12ag0881 Cone-Chr12:7847918 Cone4ag2034 Cone-Chr4:14120697 1.12E-19 wgd
Cone12ag0881 Cone-Chr12:7847918 Cone7ag1948 Cone-Chr7:12422298 3.71E-50 wgd
Cone12ag0881 Cone-Chr12:7847918 Cone8ag0912 Cone-Chr8:8839713 5.17E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0881 - - - 0.0