Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0888 ATGTCATGGCAGCAGGAGGAGTCGGATCCAGTATCTCATCGCGGCGGAGAAGTTGGAGGAGCTGGTCCGAGTGAACCGTCGCCATCTTCCACCATTTCCGAGGTCGAAGAAAAGCCTTCGGTGTTGTTGACGTCATCATCATCCTCCTCACCTTCTCCGTCTCCGACGACTTCTTCTCCGCCACCTCTCTCATGGCCGCAGGACGGCGAGCTCAGTCTCGAATGGATCCGAGGTCTCACGAGCCTCTTCGAGTGGTCTTCCAGGAACCTGCCTCCGTCCGATCTCCCGTCTGTACTTCCGGTTTCTGTATTCGATAAGCTCGTTCTCTCTGCCTCGAAAATCCTCCACAGAGAACCTAATTTTCTTAGGATTCTTGACGATTCTGTGCCTGATGATTCCGTCGTCGTCGTCGTCGGAGATGTTCATGGCCAGTTGCACGATCTCATGTTTCTCATGCAAGATGCTGGATTTCCTTCTGAAAATCGCTTTTTCGTATTTAATGGAGATTACGTTGATAGAGGAGCTTGGGGCCTCGAAACCTTCTTGATCCTATTGGCTTGGAAGGTCTTTATACCAGACCGAGTATTTCTTCTTCGTGGAAACCATGAGTCCAAGTACTGCACATCTGTGTACGGGTTTGAGAAGGAAGTACTGGCAAAGTATGGAGTAGATAAAGGTAAGCATGTTTATAGGAAATGTTTGGGATGCTTTGAAGGGCTGCCTTTGGCATCCATTATTGCTGGACGAGTATATACAGCTCATGGAGGGCTTTTCCGCAGCATTATTGTCCCTCCATCAAAAAGATCAAAAGCAAAGAAAAATCGTAGAATAACTATTGCTGCCGGAGCCAGCTCAGTGTTATCACTTGGTTCTCTGGAGGATCTTTCTAAAGCTAGGAGAACAGTACTTGACCCGCCATGGGAGGGCTTGAATTTGATTCCTGGAGATGTGCTTTGGTCAGATCCCTCTATGAATCCTGGTCTTTCTCCAAATAAAGAGAGAGGCATAGGTCTGCTTTGGGGTCCTGATTGCACTGAAGAATTCTTAAAGAAATACAATCTAAAGCTAATAATCAGATCCCATGAAGGTCCAGATGCTAGGGAGAAGAGGCCTGGTCTTGGAGGAATGGATAAAGGTTACACCATAGACCATGTAGTTGAGTCTGGGAAGTTAATAACTTTGTTTAGTGCTCCAGATTACCCCCAGTTTCAGGCTACGGAGAGGTACAAAAATAAAGGTGCCTACATAGTCTTGGAGCCACCTAGTTACGACATTCCGGTGTTTCATAGTTTTGAAGCTATTACCCCAAGACCAAAGGTGAATCCCTATTATGATTTTGAAGATGTAATTGATTCTGATGAAGAATTGGACTTGACATCAATGGTAACAGAAAGTATATGA 1401 46.04 MSWQQEESDPVSHRGGEVGGAGPSEPSPSSTISEVEEKPSVLLTSSSSSSPSPSPTTSSPPPLSWPQDGELSLEWIRGLTSLFEWSSRNLPPSDLPSVLPVSVFDKLVLSASKILHREPNFLRILDDSVPDDSVVVVVGDVHGQLHDLMFLMQDAGFPSENRFFVFNGDYVDRGAWGLETFLILLAWKVFIPDRVFLLRGNHESKYCTSVYGFEKEVLAKYGVDKGKHVYRKCLGCFEGLPLASIIAGRVYTAHGGLFRSIIVPPSKRSKAKKNRRITIAAGASSVLSLGSLEDLSKARRTVLDPPWEGLNLIPGDVLWSDPSMNPGLSPNKERGIGLLWGPDCTEEFLKKYNLKLIIRSHEGPDAREKRPGLGGMDKGYTIDHVVESGKLITLFSAPDYPQFQATERYKNKGAYIVLEPPSYDIPVFHSFEAITPRPKVNPYYDFEDVIDSDEELDLTSMVTESI 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7879112 7882830 + Conep12aG0091400.1 Cone12ag0888 449732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0888 466 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 46 457 IPR051134 -
Cone12ag0888 466 SMART pp2a_7 99 435 IPR006186 GO:0016787(InterPro)
Cone12ag0888 466 MobiDBLite consensus disorder prediction 24 53 - -
Cone12ag0888 466 CDD MPP_PP7 65 445 IPR041754 -
Cone12ag0888 466 Gene3D - 95 458 IPR029052 -
Cone12ag0888 466 FunFam Serine/threonine-protein phosphatase 83 459 - -
Cone12ag0888 466 Pfam Calcineurin-like phosphoesterase 135 362 IPR004843 GO:0016787(InterPro)
Cone12ag0888 466 ProSitePatterns Serine/threonine specific protein phosphatases signature. 198 203 IPR006186 GO:0016787(InterPro)
Cone12ag0888 466 MobiDBLite consensus disorder prediction 1 66 - -
Cone12ag0888 466 SUPERFAMILY Metallo-dependent phosphatases 98 436 IPR029052 -
Cone12ag0888 466 PRINTS Serine/threonine phosphatase family signature 390 406 IPR006186 GO:0016787(InterPro)
Cone12ag0888 466 PRINTS Serine/threonine phosphatase family signature 197 221 IPR006186 GO:0016787(InterPro)
Cone12ag0888 466 PRINTS Serine/threonine phosphatase family signature 296 323 IPR006186 GO:0016787(InterPro)
Cone12ag0888 466 PRINTS Serine/threonine phosphatase family signature 164 191 IPR006186 GO:0016787(InterPro)
Cone12ag0888 466 PRINTS Serine/threonine phosphatase family signature 134 161 IPR006186 GO:0016787(InterPro)
Cone12ag0888 466 PRINTS Serine/threonine phosphatase family signature 235 261 IPR006186 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1125 Cone-Chr11:8710754 Cone12ag0888 Cone-Chr12:7879112 2.94E-133 dispersed
Cone12ag0888 Cone-Chr12:7879112 Cone18ag0453 Cone-Chr18:2207524 7.83E-142 dispersed
Cone12ag0888 Cone-Chr12:7879112 Cone8ag0921 Cone-Chr8:8891620 5.31e-315 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0888 K04460 - csv:116402529 686.797