Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0889 ATGACCGATCCGAACGAGAATGAGAATACTGGGCAAGATGTGCCAGTAGCTATGGAGCAAGACCCCCAGGCTAAAGCAGAAGCTGCAACCCATGATTCTACTCACTCTTTGCCTTCTGAGGAAACACCAAATCTCCCTGATAATGGAAATGCCTTACCTGAAACTCAGGCCGATCCTAAAACTGCTCCTGATGATAAGAATTTAGATTCACAGACTAGTCCACAGCAACCAAATCAAGATTCTCCTCCTTTAGTTTCTTTGCAAACTGAACAAGAATTGGCCGAGCCGGATGTCAAGCCTACTATTGATGCCATGACAGAATCCAATGAATTGCATAGAAATGAGTCAAGCCCTGTTTCTATTATTGAAACTGATCAGCCTTCCACAGAGACCAAACCTGAAACTAGTGAGGTGCCTGAATCTAAAACTGGTATTGTAGACGACAACTTAGCGGCGAGTAATGATGAACCTGCATCTTCTCTTATGAAATATGAAAGTGAGAATGCTGGAGATGTGAAGGATAAGGTCATCGAAGACGATGTTGCCACTCCTGCAAATAATGGGAACTCAACCATGAATCGCTCGTTTCTTTTCGATGATCATTATTCTTATGGTAGCGAATCGGGGACTGAAGAAGACCAATCGAATTTCATGAAGGAGCTTGAAAACTTTTTCAGGGAGAGGAGCATGGAATTCAAACCTCCCAAGTTCTATGGAGAGGGTCTAAATTGTCTCAAGTTGTGGAGAGCTGTGACTAGATTGGGTGGCTATGATAAGGTGACTTCATGCAAGCTGTGGCGACAAGTTGGGGAGTCCTTCAAGCCTCCAAAGACATGCACTACAGTGTCATGGACATTCCGAGGTTTCTATGAGAAGGCGCTCCTTGATTATGAGAGGCATAAAACCCAGGGTGGTGAGCTTAATATACCCATTGTTACGCACTCAGAGCCAATGAGCATTGAAAATCCGGATTTACGATCTGGTAGAGCACGAAGGGATGCTGCTGCACGAGCTATGCAGGGCTGGCACTCTCAGCGTCTTTTGGGTAATGGAGAAGTTAGTGACCCTATTATCAAGGACAAGAAATCTCTTTCCTTGCAAAAACGCGAAAAACAGCTAAAGAATATTGGTTTACTTAAACGTAAGAAACCATCTTATATGGAGCAGGAGGTCAAAGCTGCACGTTCCAAAGCAATAGTAGTATCAAAACCACAATTGGACATAGCGGTTGTTGATATTGGACCCCCAGCTGACTGGGTGAAGATTAATGTACAAAGAACGAAAGATTGTTTTGAGGTTTATGCTTTAGTCCCGGGACTTCTTCGTGAGGAGGTGCGTGTTCAATCAGATCCGGCAGGACGTCTGGTAATAAGCGGTGAACCTGAACATCCCGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTTGTCAGCTTACCTTCGAGAATCGACCCGCATCAGACATCAGCCGTGGTTACCTTGCACGGACAGTTATTTGTTCGAGTTCCCTTTGAGCAGTCAGAATAA 1527 44.6 MTDPNENENTGQDVPVAMEQDPQAKAEAATHDSTHSLPSEETPNLPDNGNALPETQADPKTAPDDKNLDSQTSPQQPNQDSPPLVSLQTEQELAEPDVKPTIDAMTESNELHRNESSPVSIIETDQPSTETKPETSEVPESKTGIVDDNLAASNDEPASSLMKYESENAGDVKDKVIEDDVATPANNGNSTMNRSFLFDDHYSYGSESGTEEDQSNFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTQGGELNIPIVTHSEPMSIENPDLRSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKKSLSLQKREKQLKNIGLLKRKKPSYMEQEVKAARSKAIVVSKPQLDIAVVDIGPPADWVKINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7883086 7888279 - Conep12aG0091500.1 Cone12ag0889 449733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0889 508 SMART bright_3 212 303 IPR001606 GO:0003677(InterPro)
Cone12ag0889 508 FunFam AT-rich interactive domain-containing protein 3 400 508 - -
Cone12ag0889 508 CDD ARID 213 298 - -
Cone12ag0889 508 Gene3D - 211 309 IPR036431 GO:0003677(InterPro)
Cone12ag0889 508 MobiDBLite consensus disorder prediction 111 134 - -
Cone12ag0889 508 SUPERFAMILY ARID-like 198 312 IPR036431 GO:0003677(InterPro)
Cone12ag0889 508 MobiDBLite consensus disorder prediction 1 144 - -
Cone12ag0889 508 MobiDBLite consensus disorder prediction 1 16 - -
Cone12ag0889 508 Pfam ARID/BRIGHT DNA binding domain 214 298 IPR001606 GO:0003677(InterPro)
Cone12ag0889 508 CDD ACD_sHsps_p23-like 427 503 - -
Cone12ag0889 508 Pfam Hsp20/alpha crystallin family 425 507 IPR002068 -
Cone12ag0889 508 ProSiteProfiles ARID domain profile. 211 302 IPR001606 GO:0003677(InterPro)
Cone12ag0889 508 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 28 507 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)
Cone12ag0889 508 SUPERFAMILY HSP20-like chaperones 417 504 IPR008978 -
Cone12ag0889 508 Gene3D - 411 508 IPR008978 -
Cone12ag0889 508 MobiDBLite consensus disorder prediction 66 88 - -
Cone12ag0889 508 FunFam AT-rich interactive domain-containing protein 3 211 310 - -
Cone12ag0889 508 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 408 508 IPR002068 -
Cone12ag0889 508 SMART ARID_2 208 298 - -
Cone12ag0889 508 MobiDBLite consensus disorder prediction 27 55 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0889 Cone-Chr12:7883086 Cone8ag0922 Cone-Chr8:8895318 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44488 PF13920 zf-C3HC4_3 6.10E-07 CL0229 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0889 - - - 0.0