Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0889 ATGACCGATCCGAACGAGAATGAGAATACTGGGCAAGATGTGCCAGTAGCTATGGAGCAAGACCCCCAGGCTAAAGCAGAAGCTGCAACCCATGATTCTACTCACTCTTTGCCTTCTGAGGAAACACCAAATCTCCCTGATAATGGAAATGCCTTACCTGAAACTCAGGCCGATCCTAAAACTGCTCCTGATGATAAGAATTTAGATTCACAGACTAGTCCACAGCAACCAAATCAAGATTCTCCTCCTTTAGTTTCTTTGCAAACTGAACAAGAATTGGCCGAGCCGGATGTCAAGCCTACTATTGATGCCATGACAGAATCCAATGAATTGCATAGAAATGAGTCAAGCCCTGTTTCTATTATTGAAACTGATCAGCCTTCCACAGAGACCAAACCTGAAACTAGTGAGGTGCCTGAATCTAAAACTGGTATTGTAGACGACAACTTAGCGGCGAGTAATGATGAACCTGCATCTTCTCTTATGAAATATGAAAGTGAGAATGCTGGAGATGTGAAGGATAAGGTCATCGAAGACGATGTTGCCACTCCTGCAAATAATGGGAACTCAACCATGAATCGCTCGTTTCTTTTCGATGATCATTATTCTTATGGTAGCGAATCGGGGACTGAAGAAGACCAATCGAATTTCATGAAGGAGCTTGAAAACTTTTTCAGGGAGAGGAGCATGGAATTCAAACCTCCCAAGTTCTATGGAGAGGGTCTAAATTGTCTCAAGTTGTGGAGAGCTGTGACTAGATTGGGTGGCTATGATAAGGTGACTTCATGCAAGCTGTGGCGACAAGTTGGGGAGTCCTTCAAGCCTCCAAAGACATGCACTACAGTGTCATGGACATTCCGAGGTTTCTATGAGAAGGCGCTCCTTGATTATGAGAGGCATAAAACCCAGGGTGGTGAGCTTAATATACCCATTGTTACGCACTCAGAGCCAATGAGCATTGAAAATCCGGATTTACGATCTGGTAGAGCACGAAGGGATGCTGCTGCACGAGCTATGCAGGGCTGGCACTCTCAGCGTCTTTTGGGTAATGGAGAAGTTAGTGACCCTATTATCAAGGACAAGAAATCTCTTTCCTTGCAAAAACGCGAAAAACAGCTAAAGAATATTGGTTTACTTAAACGTAAGAAACCATCTTATATGGAGCAGGAGGTCAAAGCTGCACGTTCCAAAGCAATAGTAGTATCAAAACCACAATTGGACATAGCGGTTGTTGATATTGGACCCCCAGCTGACTGGGTGAAGATTAATGTACAAAGAACGAAAGATTGTTTTGAGGTTTATGCTTTAGTCCCGGGACTTCTTCGTGAGGAGGTGCGTGTTCAATCAGATCCGGCAGGACGTCTGGTAATAAGCGGTGAACCTGAACATCCCGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTTGTCAGCTTACCTTCGAGAATCGACCCGCATCAGACATCAGCCGTGGTTACCTTGCACGGACAGTTATTTGTTCGAGTTCCCTTTGAGCAGTCAGAATAA 1527 44.6 MTDPNENENTGQDVPVAMEQDPQAKAEAATHDSTHSLPSEETPNLPDNGNALPETQADPKTAPDDKNLDSQTSPQQPNQDSPPLVSLQTEQELAEPDVKPTIDAMTESNELHRNESSPVSIIETDQPSTETKPETSEVPESKTGIVDDNLAASNDEPASSLMKYESENAGDVKDKVIEDDVATPANNGNSTMNRSFLFDDHYSYGSESGTEEDQSNFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTQGGELNIPIVTHSEPMSIENPDLRSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKKSLSLQKREKQLKNIGLLKRKKPSYMEQEVKAARSKAIVVSKPQLDIAVVDIGPPADWVKINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7883086 7888279 - Conep12aG0091500.1 Cone12ag0889 449733

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0889 508 SMART bright_3 212 303 IPR001606 GO:0003677(InterPro)
Cone12ag0889 508 FunFam AT-rich interactive domain-containing protein 3 400 508 - -
Cone12ag0889 508 CDD ARID 213 298 - -
Cone12ag0889 508 Gene3D - 211 309 IPR036431 GO:0003677(InterPro)
Cone12ag0889 508 MobiDBLite consensus disorder prediction 111 134 - -
Cone12ag0889 508 SUPERFAMILY ARID-like 198 312 IPR036431 GO:0003677(InterPro)
Cone12ag0889 508 MobiDBLite consensus disorder prediction 1 144 - -
Cone12ag0889 508 MobiDBLite consensus disorder prediction 1 16 - -
Cone12ag0889 508 Pfam ARID/BRIGHT DNA binding domain 214 298 IPR001606 GO:0003677(InterPro)
Cone12ag0889 508 CDD ACD_sHsps_p23-like 427 503 - -
Cone12ag0889 508 Pfam Hsp20/alpha crystallin family 425 507 IPR002068 -
Cone12ag0889 508 ProSiteProfiles ARID domain profile. 211 302 IPR001606 GO:0003677(InterPro)
Cone12ag0889 508 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 28 507 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)
Cone12ag0889 508 SUPERFAMILY HSP20-like chaperones 417 504 IPR008978 -
Cone12ag0889 508 Gene3D - 411 508 IPR008978 -
Cone12ag0889 508 MobiDBLite consensus disorder prediction 66 88 - -
Cone12ag0889 508 FunFam AT-rich interactive domain-containing protein 3 211 310 - -
Cone12ag0889 508 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 408 508 IPR002068 -
Cone12ag0889 508 SMART ARID_2 208 298 - -
Cone12ag0889 508 MobiDBLite consensus disorder prediction 27 55 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0889 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0889 Cone-Chr12:7883086 Cone8ag0922 Cone-Chr8:8895318 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1345 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0922 Cone12ag0889 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone7ag0393 . 25 367 ARID Transcription Factor Family AT1G04880 58.8 5.4e-101 365.5
Cone4ag0406 . 18 364 ARID Transcription Factor Family AT1G04880 57.7 1.9e-98 357.1
Cone8ag0922 . 194 481 ARID Transcription Factor Family AT1G20910 58.0 5.4e-89 325.5
Cone12ag0889 . 189 476 ARID Transcription Factor Family AT1G20910 57.0 8.6e-87 318.2
Cone4ag1987 . 2 312 ARID Transcription Factor Family AT1G76110 64.2 1.4e-109 393.7
Cone7ag1916 . 22 306 ARID Transcription Factor Family AT1G76110 66.1 1.5e-108 390.2
Cone17ag1432 . 1 293 ARID Transcription Factor Family AT1G76110 62.7 7.4e-103 371.3
Cone20ag0052 . 5 293 ARID Transcription Factor Family AT1G76110 63.6 9.6e-103 370.9
Cone8ag0922 . 212 511 ARID Transcription Factor Family AT1G76510 63.5 8.3e-107 384.8
Cone12ag0889 . 207 506 ARID Transcription Factor Family AT1G76510 64.3 8.3e-107 384.8
Cone4ag0844 . 2 780 ARID Transcription Factor Family AT3G43240 62.4 1.5e-281 966.1
Cone7ag0835 . 2 780 ARID Transcription Factor Family AT3G43240 62.7 1.7e-280 962.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44488 PF13920 zf-C3HC4_3 6.10E-07 CL0229 Cone TR