Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0915 ATGGAAAATATTACGGCCCAGTTGAAGGGAGGAATATCGGGGAAGTCATCGACGGGATCACTCATGCGAACTCTGTGCCGGAAGTTCAGGAGGCAGTCTTCGTTGGATACTAGACGGAACAACCTCAGGTTCAGTTTCGGTAGGCAGTCATCCTTTGATCCGATTAGACGTAGTCCTACTCCCGATAACGACCTCTGTGTGCCGGAGAACTTGGACTCGACCATACAGTTGTTGTTCGTGGCGTGCCGAGGGGACGTTAGGGGAGTGGAAGACCTGCTCGATGAGGGGATCGATGTTAATGGCATAGACTTGGACGGCCGCACCGCGCTTCATATTGCTGCTTGTGAGGGTCACGTTGAGGTCGTCAAGCTCTTGCTCAGCCGTAAAGCTAACATCGATGCTCGTGATCGATGGGGCAGTACGGCAGCTGCTGATGCCAAGAACTATGGAAATATGGAAGTTTATAATATTCTGAAGGCACGAGGAGCGAAAATTCTGAAAACCAGGAAAACACCAATGGCTGTTGCTAATCCCCGGGAAGTTCCGGAGTATGAGCTGAATCCAGTTGAGCTTCATATTCGGAAGACTGATGGGATCTCCAAGGGAACATATCAAGTTGCTAAATGGAATGGTACAAAGGTTGCTGTAAAAATACTTGATAAAGACAGCTACTCAGATCCTGAATCTATAAGTGCATTCAAACATGAGCTTACATTGTTGGAAAAGGTCCGGCATCCAAATGTGGTTCAGTTTGTTGGAGCCGTTACCCAAAATGTACCCATGATGATTGTTTCAGAGTATCATCCAAAGGGTGACCTAACTGCCTATCTTCAAAAGAAAGGACGTCTCTCTCCATCTAAAGCTCTAAGATTTGCACTTGATATTGCCAGGGGAATGAACTACCTTCATGAATGTAAGCCAGACCCGGTTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAGTGGAGATCAATTGAAGGTAGCTGGATTCGGATTGATAAGATTGTCAAAAGTTTCACCTGACAAAGCAAAACTGGTCCTGCCAGCGGTAAATATCGACCGCTCAAACTTGTACATGGCACCAGAGGTTTACAAGGACAAAATATTTGACAGAAGCGTAGATGCGTTCTCTTTCGGTCTCATGTTATATGAGATGGTTGAAGGCATACAACCTTTCCATCCCAAACCTCCAGAAGAGGTTGCCAGACTCATATGTTTAGAAGGTCAAAGACCTTCATTCAAGATCAAATTAAAAGGTTATCCACCTGATCTAAGAGAGTTGATTGAGGAATGTTGGGATCCAGAACCTGTCGTTAGACCAACTTTCTCTGAGATCCTCGTGCGATTAGACAGAATTGCTGCCAACTACACAAAACAAGGATGGTGGAAAGATACATTTAAGCTTCCATGGGCGATTTTAAGAAGGAAGAGTCTTGTTTCTGACTATGTGAATTCGTCCACTCGGGTGATTCAAAGTTTCCAGTACCTTGGACTTGATGCTAATAATTCTGGAATAAGGGAATATAGAGGAATAATAGGCAGTGGAATTTCAACTTTAGGTCTTGGAAATGTAAGGTCAGGAATCATTTCCCCAATTGGAATTCAATGGACGACACTATACATGCGGCTTGCTTCTACTGCTGCTGCAAAACAACCTGAATTTGATAGTGATGAGGAGAATAACGAGGAGTTAGTTGCTAAGAAGAGAAAGGAAGCATCTCCAGAAGAATGTGATCAAGCGGTAGAAGGTTTGAGTACTGCAAAAGCAAAGGCCAAGGCTAAACGATTGCAGGAATCTCAAAATGCTGATAAAATGATTCTGCAAAGAGTTTGGGCCACTTTCTTAGGAATTGGCCCCTCTTTAAGAGTTGTGGCTTCTATGAGCAGGAAGGACTGGGCGAAGAAGCTTGTTCATTGGAAGGAAGAATTTGTATCAACAATGAAGCATTATTGGCTGGGTTCTAAGCTCTTATGGGCTGATGTAAGGATCAGTTCAAGATTGCTCTTAAAACTTGCTGATGGGAAGAGTCTCTCTAGAAGGGAGAGACAACAACTAACCCGAACTACAGCTGATATTTTTAGGCTGGTTCCTTTTGCTGTGTTTATCATAGTTCCATTCATGGAGTTTCTTCTGCCAGTGTTTCTTAAACTGTTTCCTAATATGTTGCCATCAACTTTTCAAGACAAGATGAAAGAACAGGAGGCCTTGAAAAGGAAACTTAATGCAAGAATAGAGTATGCAAAGTTCCTTCAAGAAACTGCCAAAGAAATGGCAAAGGAAGTTCAAAATTCCCGAAGTGGGGAGCTTAAGAAGACGGCTGAAGATCTTGATCGGTTTTTGAGCAGGGTTAGAACTGGTGCTGGTGTTTCTAATGATGAAATTTTGGGATTTGCGACGCTCTTTAATGATGAACTTACCCTTGATAATATCAGCAGGCCTCGACTTGTGAATATGTGCAAGTACATGGGAATTAGCCCTTTTGGAACGGATGCATACTTACGTTATATGCTCCGAAGAAGATTGCAGCGGATTAAGGAAGATGACAAAATGATTCAAGCAGAGGGTGTGGATTCACTCTCAGAAGCTGAACTTCGTGAAGATTGTAGGGAAAGAGGAATGCTTGGATTGCTTTCTGTGGAAGAAATGCGCCAGCAGCTTCGTGATTGGTTGGATCTTTCACTTAATCACTCAGTTCCATCTTCACTTATGATTCTTTCCAGGGCCTTCACTTTATCCGGAAGGTTGAAGCCAGAGGAGGCTGTCCAAGCTACGCTGTCTTCACTACCAGATGAAGTTGTTGGAACGGTTGGTGTTACAGCTTTGCCATCTGAAGATTCTGTATCAGAAAGGAGGAGGAAGTTGGAATTCCTTAAAATGCAGGAGGAATTGATTAAGGAGGAGGAGGAGAAAGAAGAAGAGGAACATGCCAGAATGAGTGAAACTAGATCCAGTCAAGAAGATTTGGCATTAAGGGAAATGCGCAATCCGACTGCAAGAGAAGCACAAGAACAAGCTAGACTGAGAACAGTGGAAAAACAAGAGCAGCTATGTGAACTCAGCCATGCATTGGCAGTTCTGGCATCTGCATCCTCTGTGAGCAGAGAGCGTGAAGAGTTCTTGAGACTTGTTAATAAGGAGATAGAACTTTATAATAGCATGGTAGAAAAAGAGGGTACAGAAGGTGAAGAAGAGGCAATGAAAGCATATAAAGCTGCTCGGGAGGAAACTGTGCTCTCTAATGATGCAGATGAAGATGATGAGATCTCATCAGCACTCGTAGAAAGAGTTGATGCTATGCTTCAAAACCTTGAAAAGGAAATTGATGATGTAGATGCCAAAATTGGTGATTGTTTGCAATTACTGGACAGGGATTTTGATGGAAAAGTATCTCCTGAGGAGGTTGCAGCTGCTGCTATGTACCTGAAGGATACATTAGGCAAGGAAGGTGTCCAAGAACTTATCAGCAATCTTTCCAAAGATACTGATGGAAAAATTCTTGTAGAAGACATTGTTAGATTGGGCAGTCGAGTTAAATACTCACGGCCTCCGGAAGATGGAAAAATGTAA 3576 43.09 MENITAQLKGGISGKSSTGSLMRTLCRKFRRQSSLDTRRNNLRFSFGRQSSFDPIRRSPTPDNDLCVPENLDSTIQLLFVACRGDVRGVEDLLDEGIDVNGIDLDGRTALHIAACEGHVEVVKLLLSRKANIDARDRWGSTAAADAKNYGNMEVYNILKARGAKILKTRKTPMAVANPREVPEYELNPVELHIRKTDGISKGTYQVAKWNGTKVAVKILDKDSYSDPESISAFKHELTLLEKVRHPNVVQFVGAVTQNVPMMIVSEYHPKGDLTAYLQKKGRLSPSKALRFALDIARGMNYLHECKPDPVIHCDLKPKNILLDSGDQLKVAGFGLIRLSKVSPDKAKLVLPAVNIDRSNLYMAPEVYKDKIFDRSVDAFSFGLMLYEMVEGIQPFHPKPPEEVARLICLEGQRPSFKIKLKGYPPDLRELIEECWDPEPVVRPTFSEILVRLDRIAANYTKQGWWKDTFKLPWAILRRKSLVSDYVNSSTRVIQSFQYLGLDANNSGIREYRGIIGSGISTLGLGNVRSGIISPIGIQWTTLYMRLASTAAAKQPEFDSDEENNEELVAKKRKEASPEECDQAVEGLSTAKAKAKAKRLQESQNADKMILQRVWATFLGIGPSLRVVASMSRKDWAKKLVHWKEEFVSTMKHYWLGSKLLWADVRISSRLLLKLADGKSLSRRERQQLTRTTADIFRLVPFAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMKEQEALKRKLNARIEYAKFLQETAKEMAKEVQNSRSGELKKTAEDLDRFLSRVRTGAGVSNDEILGFATLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQRIKEDDKMIQAEGVDSLSEAELREDCRERGMLGLLSVEEMRQQLRDWLDLSLNHSVPSSLMILSRAFTLSGRLKPEEAVQATLSSLPDEVVGTVGVTALPSEDSVSERRRKLEFLKMQEELIKEEEEKEEEEHARMSETRSSQEDLALREMRNPTAREAQEQARLRTVEKQEQLCELSHALAVLASASSVSREREEFLRLVNKEIELYNSMVEKEGTEGEEEAMKAYKAAREETVLSNDADEDDEISSALVERVDAMLQNLEKEIDDVDAKIGDCLQLLDRDFDGKVSPEEVAAAAMYLKDTLGKEGVQELISNLSKDTDGKILVEDIVRLGSRVKYSRPPEDGKM 1191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8050576 8060498 + Conep12aG0094100.1 Cone12ag0915 449759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0915 1191 Gene3D - 1036 1190 - -
Cone12ag0915 1191 SMART ANK_2a 72 101 IPR002110 GO:0005515(InterPro)
Cone12ag0915 1191 SMART ANK_2a 105 134 IPR002110 GO:0005515(InterPro)
Cone12ag0915 1191 SMART ANK_2a 138 167 IPR002110 GO:0005515(InterPro)
Cone12ag0915 1191 SUPERFAMILY EF-hand 1111 1176 IPR011992 -
Cone12ag0915 1191 CDD STKc_MAP3K-like 199 452 - -
Cone12ag0915 1191 SMART serkin_6 193 456 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0915 1191 Gene3D Transferase(Phosphotransferase) domain 1 269 472 - -
Cone12ag0915 1191 MobiDBLite consensus disorder prediction 968 992 - -
Cone12ag0915 1191 Pfam Ankyrin repeats (3 copies) 78 166 IPR002110 GO:0005515(InterPro)
Cone12ag0915 1191 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag0915 1191 FunFam serine/threonine-protein kinase STY46-like 186 269 - -
Cone12ag0915 1191 ProSiteProfiles Ankyrin repeat region circular profile. 105 137 - -
Cone12ag0915 1191 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515(InterPro)
Cone12ag0915 1191 ProSiteProfiles Protein kinase domain profile. 189 455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0915 1191 Pfam Protein tyrosine and serine/threonine kinase 199 451 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag0915 1191 SUPERFAMILY Protein kinase-like (PK-like) 202 452 IPR011009 -
Cone12ag0915 1191 ProSiteProfiles EF-hand calcium-binding domain profile. 1112 1147 IPR002048 GO:0005509(InterPro)
Cone12ag0915 1191 Gene3D - 58 184 IPR036770 -
Cone12ag0915 1191 ProSiteProfiles Letm1 ribosome-binding (RBD) domain profile. 741 933 IPR033122 GO:0043022(InterPro)
Cone12ag0915 1191 FunFam Integrin-linked protein kinase 1 47 184 - -
Cone12ag0915 1191 Coils Coil 1096 1123 - -
Cone12ag0915 1191 Pfam LETM1-like, RBD 680 913 IPR033122 GO:0043022(InterPro)
Cone12ag0915 1191 PANTHER LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN 556 1085 IPR044202 GO:0005743(InterPro)|GO:0006875(PANTHER)
Cone12ag0915 1191 SUPERFAMILY Ankyrin repeat 77 172 IPR036770 -
Cone12ag0915 1191 Gene3D Phosphorylase Kinase; domain 1 189 268 - -
Cone12ag0915 1191 FunFam Integrin-linked protein kinase family 269 468 - -
Cone12ag0915 1191 Coils Coil 957 980 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0610 Cone-Chr10:2895140 Cone12ag0915 Cone-Chr12:8050576 2.61E-306 dispersed
Cone12ag0915 Cone-Chr12:8050576 Cone3ag0636 Cone-Chr3:3159585 6.60e-316 dispersed
Cone12ag0915 Cone-Chr12:8050576 Cone8ag0943 Cone-Chr8:9024987 2.31E-244 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81970 PF13812 PPR_3 0.00056 CL0020 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0915 K17800 - cit:102618806 1017.68