Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0937 ATGTCATTCCGGAGCATAGTCCGAGATGTAAGGGATAGTATAGGGAGCTTATCAAGACGGGGGTTTGAGGTCAGGCTGACTGGGCTGACTGGACATAGCCGGGCAAGGTCTCATGGTTCAGTAAATGATTTGCATGATCCGGGTAATCTTGTGGTTCAAGATAGCCGGTGGGCTAGCCTTCCACCTGAGCTTCTCTATGATGTCATTAGGAGGTTAGAGGAGAGTGAAAGCACCTGGCCCTCTCGGAAGCATGTCGTTGCATGTGCTGCCGTTTGCCGTTCTTGGCGGGTCATGTGCAAGGAAATCGTTATGGGTCCGGAAATTTGTGGAAAGCTCACCTTCCCAGTCTCCCTTAAGCAGGCAGGGCCACGAGATGGAACCATTCAGTGCTTCATTAAAAGGGATAAATCTAATTTGACATACCATCTCTTTCTGTGTCTTAGCCCAGCCCTACTGGTTGAGAATGGGAAGTTTCTTCTTTCTGCAAAACGGACCAGAAAAACTACAAGCCCAGAGTATGTTATCTCTATGGATGCTGACCATATTTCAAGATCTAGCAGCTCTTACATCGGAAAGCTAAGGTCAAATTTTCTTGGCACAAAATTCATCATATACGACACACAACCACCCTACACTTCTACCTCCTCGGGCCAACCATCCTTGGGTCGAAGCAGCCGGAGATTCTACTCTAAAAAGGTCTCACCCAAAGTCCCAACTGGCAGCTACCCCATAGCTCAGATCTCATACGAGCTGAACGTCCTAGGCACGCGGGGCCCACGGAGAATGCATTGTGTCATGCAGTCAATCCCAGCATCCTCCCTCTTTCTCGGTGGGAATGTACCTGGCCAACCCGAGCTCCTCCCACGAAGCCTCGAGGACTCTTTCCGTAGCATATCCTTCTCCAAACCTCTTGACCATTCCATGGAGTTTAGCAGTGCCCGTTTTTCCGAGATCAAGCGGTCAGGAAATGGTGGTGATGATGAGGAAGGAAAAGTTAGGCCGTTGGTTCTGAAGAATAAGCCGCCTAGGTGGCACGAGCAGTTACAGTGCTGGTGTTTGAATTTTCGGGGACGTGTGACAGTTGCTTCGGTTAAGAATTTTCAGTTGATTGCCGCCACGCAACCAGGTGCGGGGGCCCCCACCCCTTCCCAGCCAGGCCCACCTGATCACGATAAGATAATCCTGCAGTTCGGGAAGGTCGGGAAAGATATGTTCACCATGGACTATCGGTATCCTCTATCAGCTTTTCAGGCTTTTGCGATTTGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAG 1302 49.92 MSFRSIVRDVRDSIGSLSRRGFEVRLTGLTGHSRARSHGSVNDLHDPGNLVVQDSRWASLPPELLYDVIRRLEESESTWPSRKHVVACAAVCRSWRVMCKEIVMGPEICGKLTFPVSLKQAGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRKTTSPEYVISMDADHISRSSSSYIGKLRSNFLGTKFIIYDTQPPYTSTSSGQPSLGRSSRRFYSKKVSPKVPTGSYPIAQISYELNVLGTRGPRRMHCVMQSIPASSLFLGGNVPGQPELLPRSLEDSFRSISFSKPLDHSMEFSSARFSEIKRSGNGGDDEEGKVRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPGAGAPTPSQPGPPDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8169180 8172351 + Conep12aG0096500.1 Cone12ag0937 449781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0937 433 ProSitePatterns Tub family signature 1. 355 368 IPR018066 -
Cone12ag0937 433 CDD F-box_AtTLP-like 57 101 - -
Cone12ag0937 433 FunFam Tubby-like F-box protein 114 433 - -
Cone12ag0937 433 Gene3D Tubby Protein; Chain A 116 427 IPR025659 -
Cone12ag0937 433 PRINTS Tubby superfamily signature 411 433 IPR000007 -
Cone12ag0937 433 PRINTS Tubby superfamily signature 241 268 IPR000007 -
Cone12ag0937 433 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Cone12ag0937 433 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Cone12ag0937 433 PRINTS Tubby superfamily signature 390 409 IPR000007 -
Cone12ag0937 433 PRINTS Tubby superfamily signature 337 354 IPR000007 -
Cone12ag0937 433 PRINTS Tubby superfamily signature 355 371 IPR000007 -
Cone12ag0937 433 FunFam Tubby-like F-box protein 52 105 - -
Cone12ag0937 433 SUPERFAMILY F-box domain 55 101 IPR036047 GO:0005515(InterPro)
Cone12ag0937 433 SUPERFAMILY Tubby C-terminal domain-like 106 433 IPR025659 -
Cone12ag0937 433 Pfam F-box-like 57 100 IPR001810 GO:0005515(InterPro)
Cone12ag0937 433 Gene3D - 52 104 - -
Cone12ag0937 433 Pfam Tub family 118 428 IPR000007 -
Cone12ag0937 433 PANTHER TUBBY-RELATED 52 432 - -
Cone12ag0937 433 ProSitePatterns Tub family signature 2. 418 433 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0937 Cone-Chr12:8169180 Cone7ag1448 Cone-Chr7:10255177 4.03E-236 dispersed
Cone12ag0937 Cone-Chr12:8169180 Cone8ag0970 Cone-Chr8:9140265 3.51E-306 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44490 PF01384 PHO4 1.60E-107 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0937 K19600 - gmx:100814578 728.783