Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0966 ATGCCCATTATAAAGGAGGAAGCCATCTTGTTTACTCTTCTCATTCAAGATCAAAACACCATGCAGAAGATGAACAACCTCCTCTCAACTCTTCTCTCCATCTTCTTCTTCTCCTTCATTTCTCATTTCCATTACCCTTCTCTTGCTTCTTCAACCCAGCAACAAGATATCAAACCGGAAGATGAAGTAGAAGCGCTTCTGCAATGGAAATCAAACCTTCAAAACCAAACCCAATCTTTCCTCCCTTCATGGATACTTTCTTCTCCTCCTGCTCCAACAAGTCCATGTACTTCTTGGGCTGGACTGATCTGCAATGAAAACTCGAGTGTGACGCAAATCAACCTCACCGCTCTCGGACTTTCCGGTACTCTCTCCAACTTCAACTTCTCTTCCTTCCCTAACCTCTCCATCCTTGACCTTCATGGCAACAATCTTTATGGAAGCCTCCCTCCTTCTATAACAACTCTGTCCATGCTAACTTCTCTCAATCTAAGCTCCAACCAATTCTCCGGCCTTGTACCTGTAGACCTTGGAAAATTACATAACTTAAAGAAGTTAAGCTTCTCTAACAACTTTCTTTCCGGTCCCATTCCTCGATCAGTAGGAAACATGACAAGTCTTTCATTCCTACATCTTGCTACAAACCATCTAACCGGTCTTATCCCTTCTGAGCTCGGAAACTTGACATCTCTTGTCGAGCTAAGATTGAACTTCAACAACTTTTCTGGTTCAATCCCGACTTCATTAGGCAACTTGGTTGGCTTAAAAGTCTTGTCACTTTACGGGAACAAATTGTCCGGTCCATTACCTCAAGAGATTAACAACCTTACTAACTTGACTCATTTCTATCTCTCAAACAATTCGATTTCGGGATCTTTGCCGGAATCTTTATGTCATGGAGTTAAACTCCAATGTTTTTGTGCTAGTACTAATCAGTTTTCCGGTGTTGTTCCGAAGGGGTTAAAGAACTGCACTAGCTTGACTAGAATCAGGCTTGATCGAAACAATCTTGTTGGAAATGTTTCGGAAGATTTCGGTATATACCCAAATCTTGATTACATTGATTTGAGCTATAATAATTTCCATGGTGAGATTTCGCCAAATTGGGGTAAGTGTGGAGTTTTAACTAGTTTAAAAATATCCAACAACAAGATTACAGGAGAGATTCCTACTGAGCTTGCAAAATCTAGTCTTTTACATGTACTCGATCTGTCTTCGAATAATCTTGTTGGGAGGATTCCAAAGGAGTTAGGAAACTTGAAGTCCTTGTTCAATCTTACTTTGAGTAGTAACAAACTTTCTGATTCCGTACCAAGTGAGATTGGAACTTTGCCTGAGCTCTCATATCTTGATATATCATCAAACAATCTAAGTGGCTCCATACCAAGAGAGATAAGCGATTGCTCGAAAATGTTGTACTTGAAGTTGAGCAAGAATGACTTCCGAGGGGAAATTCCGAAAGAAATTGGAAACTTGGTCTCACTGCAAGTGTTGTTGGATCTAAGTCATAACTCACTTTCTGGAGAAATTCCATGGCAACTTGGGAACATGGTCAAATTGGAGATACTGAATCTCTCTCATAATCAACTTATTGGCTCAATCCCTTCCCAATTTGACCAAATGGATAGTTTAAGAGCGGTTGATTTGTCCTACAATGAGTTAACAGGCCCGATCCCTGATAGCATCGCCTTTCGGAATGCATCGGACGAAGCATTCCAAAACAACAAGGGCTTGTGTGGTGCCCACACCGGCCTGAAAATTTGTCCTTTCCTTGTCAATCAAAAGGAGAAGAAGAAAAATGACATCCCATTTACACTAATCCTCGTAGCTCTCCTTGCGGCTTTCCTCATCATGTGTATAGTTTTCGGATTTATCTGTTTCATCCGTAAAAGAAGATCAAGAAAGATAAATACTATAAGTATCCAGATGCAAGATTCAACACAGCAGGGAAATAATAATAATAATTTATTTGCAATTTGGAGCTATGATGGTAAACTAGTGTATGAAGATATCAAGGAAGCAACAGAAGGGTTTGACCCGAAGTATTGCATTGGGGTGGGAGGGCATGGAAGTGTGTACCGGGCCAAGTTATCGACCGGTCAAGTTGTGGCCGTGAAGAAGCTCCATTCATTTCAATATGCTAAGGTGCAAGAGGACAATAAAATTTTCGAGGCAGAGATTAGGGCATTGACTGAGATAAGGCATCGGAACATTGTGAAGCTCTATGGTTTCTGCTCTCATGCTAGGCAATCATTTGTCGTGTATGAGTACTTGGAGAAGGGAAGCTTAGCCAATATTCTAGGCAATGAAGAGCAAGCAAAGGAGTTGGATTGGGTGAAGAGGATCAATGTGGTAAAAGGACTTGTCAATGCTCTTCATTACATTCATCACAATTGTTCGCCTCCAATCATTCATCGGGACATTTCAAGCAACAATGTGCTTTTGGATATGAACTATGAGGCTCATCTTTCGGATTTTGGCACTGCTAGACTCCTAAAGCTTGATTCCTCTAACTGGACCGGGGCGGCTGGCACTTACGGCTACATTGCTCCAGATCTTGCATATGCAATGAAGGTGACGGAGAAATGCGATGTGTATAGTTTTGGAGTGGTGACACTTGAAACCATGATGGGTTATCATCCCGGTGAACTAATATGCTCACTTTCAAGCTCTTCTTCTTCATCAAGCACAAGTAATCTATTTTCATCAGAATCAAAAACTGATCATAATTCACTGATGTTAAAGGACCTATTAGACAAGCGCCTACCGGCCCTCCGTGAGTCCGAACTTATTAAGGAAGTAATCACTATCATTAAGCTGGCCTTAGCATGTATCAATCCCAAACTTAGACCCAGTATGCAGCTCGTCTATCAAGAGCTATCGGCTCGTCGGCATTCCTCATTTTCCGAACCATTTTTCGATATCACATTGGGGGAGCTTATGATGAATTCAGAGGTCAAGTGA 2964 41.4 MPIIKEEAILFTLLIQDQNTMQKMNNLLSTLLSIFFFSFISHFHYPSLASSTQQQDIKPEDEVEALLQWKSNLQNQTQSFLPSWILSSPPAPTSPCTSWAGLICNENSSVTQINLTALGLSGTLSNFNFSSFPNLSILDLHGNNLYGSLPPSITTLSMLTSLNLSSNQFSGLVPVDLGKLHNLKKLSFSNNFLSGPIPRSVGNMTSLSFLHLATNHLTGLIPSELGNLTSLVELRLNFNNFSGSIPTSLGNLVGLKVLSLYGNKLSGPLPQEINNLTNLTHFYLSNNSISGSLPESLCHGVKLQCFCASTNQFSGVVPKGLKNCTSLTRIRLDRNNLVGNVSEDFGIYPNLDYIDLSYNNFHGEISPNWGKCGVLTSLKISNNKITGEIPTELAKSSLLHVLDLSSNNLVGRIPKELGNLKSLFNLTLSSNKLSDSVPSEIGTLPELSYLDISSNNLSGSIPREISDCSKMLYLKLSKNDFRGEIPKEIGNLVSLQVLLDLSHNSLSGEIPWQLGNMVKLEILNLSHNQLIGSIPSQFDQMDSLRAVDLSYNELTGPIPDSIAFRNASDEAFQNNKGLCGAHTGLKICPFLVNQKEKKKNDIPFTLILVALLAAFLIMCIVFGFICFIRKRRSRKINTISIQMQDSTQQGNNNNNLFAIWSYDGKLVYEDIKEATEGFDPKYCIGVGGHGSVYRAKLSTGQVVAVKKLHSFQYAKVQEDNKIFEAEIRALTEIRHRNIVKLYGFCSHARQSFVVYEYLEKGSLANILGNEEQAKELDWVKRINVVKGLVNALHYIHHNCSPPIIHRDISSNNVLLDMNYEAHLSDFGTARLLKLDSSNWTGAAGTYGYIAPDLAYAMKVTEKCDVYSFGVVTLETMMGYHPGELICSLSSSSSSSSTSNLFSSESKTDHNSLMLKDLLDKRLPALRESELIKEVITIIKLALACINPKLRPSMQLVYQELSARRHSSFSEPFFDITLGELMMNSEVK 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8355603 8358745 - Conep12aG0099400.1 Cone12ag0966 449810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0966 987 SUPERFAMILY Protein kinase-like (PK-like) 656 960 IPR011009 -
Cone12ag0966 987 Coils Coil 713 733 - -
Cone12ag0966 987 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 248 961 IPR051716 -
Cone12ag0966 987 Pfam Protein kinase domain 683 956 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0966 987 Gene3D Ribonuclease Inhibitor 219 320 IPR032675 -
Cone12ag0966 987 Gene3D Ribonuclease Inhibitor 466 588 IPR032675 -
Cone12ag0966 987 Gene3D Ribonuclease Inhibitor 398 465 IPR032675 -
Cone12ag0966 987 Gene3D Ribonuclease Inhibitor 322 397 IPR032675 -
Cone12ag0966 987 Gene3D Phosphorylase Kinase; domain 1 638 757 - -
Cone12ag0966 987 Gene3D Transferase(Phosphotransferase) domain 1 758 971 - -
Cone12ag0966 987 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 276 591 - -
Cone12ag0966 987 Pfam Leucine rich repeat 499 554 IPR001611 GO:0005515(InterPro)
Cone12ag0966 987 ProSiteProfiles Protein kinase domain profile. 678 973 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0966 987 SUPERFAMILY L domain-like 73 339 - -
Cone12ag0966 987 PRINTS Leucine-rich repeat signature 447 460 - -
Cone12ag0966 987 PRINTS Leucine-rich repeat signature 517 530 - -
Cone12ag0966 987 FunFam MDIS1-interacting receptor like kinase 2 758 966 - -
Cone12ag0966 987 ProSitePatterns Tyrosine protein kinases specific active-site signature. 803 815 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag0966 987 FunFam Nuclear pore complex protein NUP107 59 223 - -
Cone12ag0966 987 SUPERFAMILY L domain-like 323 581 - -
Cone12ag0966 987 ProSiteProfiles Leucine-rich repeat profile. 519 541 IPR001611 GO:0005515(InterPro)
Cone12ag0966 987 FunFam Leucine-rich repeat receptor protein kinase MSP1 641 757 - -
Cone12ag0966 987 ProSitePatterns Protein kinases ATP-binding region signature. 684 707 IPR017441 GO:0005524(InterPro)
Cone12ag0966 987 Gene3D Ribonuclease Inhibitor 58 218 IPR032675 -
Cone12ag0966 987 Pfam Leucine rich repeat N-terminal domain 60 105 IPR013210 -
Cone12ag0966 987 Pfam Leucine Rich Repeat 375 394 IPR001611 GO:0005515(InterPro)
Cone12ag0966 987 Pfam Leucine Rich Repeat 182 204 IPR001611 GO:0005515(InterPro)
Cone12ag0966 987 Pfam Leucine Rich Repeat 447 468 IPR001611 GO:0005515(InterPro)
Cone12ag0966 987 Pfam Leucine Rich Repeat 230 252 IPR001611 GO:0005515(InterPro)
Cone12ag0966 987 Pfam Leucine Rich Repeat 255 276 IPR001611 GO:0005515(InterPro)
Cone12ag0966 987 Pfam Leucine Rich Repeat 159 180 IPR001611 GO:0005515(InterPro)
Cone12ag0966 987 Pfam Leucine Rich Repeat 278 299 IPR001611 GO:0005515(InterPro)
Cone12ag0966 987 Pfam Leucine Rich Repeat 206 228 IPR001611 GO:0005515(InterPro)
Cone12ag0966 987 Pfam Leucine Rich Repeat 350 372 IPR001611 GO:0005515(InterPro)
Cone12ag0966 987 Pfam Leucine Rich Repeat 399 420 IPR001611 GO:0005515(InterPro)
Cone12ag0966 987 Pfam Leucine Rich Repeat 134 156 IPR001611 GO:0005515(InterPro)
Cone12ag0966 987 SMART LRR_typ_2 132 155 IPR003591 -
Cone12ag0966 987 SMART LRR_typ_2 276 300 IPR003591 -
Cone12ag0966 987 SMART LRR_typ_2 444 468 IPR003591 -
Cone12ag0966 987 SMART LRR_typ_2 517 540 IPR003591 -
Cone12ag0966 987 SMART LRR_typ_2 156 179 IPR003591 -
Cone12ag0966 987 SMART LRR_typ_2 541 566 IPR003591 -
Cone12ag0966 987 SMART LRR_typ_2 228 252 IPR003591 -
Cone12ag0966 987 SMART LRR_typ_2 204 227 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0966 Cone-Chr12:8355603 Cone1ag1077 Cone-Chr1:55362759 2.39E-104 dispersed
Cone12ag0966 Cone-Chr12:8355603 Cone17ag1224 Cone-Chr17:8867978 7.02E-103 wgd
Cone12ag0966 Cone-Chr12:8355603 Cone8ag1002 Cone-Chr8:9369579 4.03E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81972 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0966 - - - 0.0