Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0971 ATGGCGGAGCTTGGATCTTATGGATTAGGTCCTCGTTTAGATATTAAACAATTACAAATAGAAGCTCAAAATAGATGGTTGCGGCCAGCCGAAGTTTGTGAAATTCTCTGCAATTATCAGAAGTTTCATATTGCATCAGAGCCTCCAAACAGACCACCGAGTGGTTCACTTTTTCTTTTTGATCGGAAGGTGTTAAGATACTTTAGAAAGGATGGTCATAATTGGAGGAAGAAAAAAGATGGCAAGACGGTGAAGGAAGCTCATGAGAAATTGAAGGTTGGAAGTGTTGATGTATTACACTGCTACTATGCTCATGGAGAAGAAAATGAAAACTTTCAAAGGCGTAGCTATTGGATGCTTGAAGAGAATTTGACGCACATTGTTTTTGTTCACTACTTGCAAGTTAAGGGTAATAGAACCTATACTGGCTCTGCTAAAGAGACTGATGAAGTCTCGTCAACTTCCTCAATCGGCGGTCCTAGTAGTTCCAGCTCTCCTACAAGTCACACTAGAGCCACATTTGGAAATGTGGACCCCCCCAGCTCATCTAGTACCATGACTTCATTATATGAAGATGCTGATTCTGAAGATCACCAAGCAACTTCAAAAATCAATTCCTTTCCAGGGTCACTACGAACGGGAAATGGCCCTCTGATGGATAAGATGGATGGCAGAACCTCAGGATTATATTATCTATCAGAAATCCAGAAAGATGTTTACAGTGATAATAATGGAGGTATTAATATGGTCAACTCTCAAAAAACACTTGGTTCGGCATCTTGGGAAGAGATCTTCAAACAATCTATGACAGATATACCATCCCATGTTTCAACTCTCGGACAACAAAATATTATCCCAGGCAAATTAATGGGCAATACTGCCGTCAAGGAGTATGGGCTCCAGTGGCAGATTCCTCTTGAAGACTTCCCAGAGGGACCAGTGGACCAGTTGTCAGATTTAGAATCTTTGTATGAAATACGTAACAGATTATTTGAGCCAGGAAATCATGATGATATTTATGGAAGTAATCCTAGAATAATTAATACTCATCCAGATATGCAAAACCATCAACTGCTACCAAATGACCTCCATATACAGCTTACCAATGATGAATCTCAATTCCCAATGAAATTGAGTTCTGAGAATGATATCCCCGTCAAAGGAAATTTGCCCTACCCTTTGACTTTCAAACAGTCATTACTTGATGGAGAAGAAGGTTTGAAGAAGGTGGACAGCTTCTCTAGGTGGGTAAGTAAAGAACTTAAAGAACTTGGGGAGGTAGATGATTTGCGTATGGAGTCATCATCTGGTATTTCTTGGACCACTGTTGAATGTAGAGATATCATTGGTGATTCGTCATTGAGCCCCTCTCTCTCTCAAGACCAACTCTTCAGCATAAGAAGTTTTTCACCAAAGTGGACATACACGGACTCGGAAGCTGAGGTTTTGATTATAGGAAGATATTTGGGCTCTCAACAAGGAATTGCAGCTATCAACTGGTCTTGTATGTTTGGGGAAGTAGAAGTTCCTGCCGAGGTTTTGGCTGATGGAATTCTTTGTTGCCGTGCTCCACCTCATAGTGTTGGGCAAGTTCCTTTTTACATAACATGCTCCAATAGAGTTGCTTGCAGTGAAGTGCGAGAATTTGAGTACCTAGCTGGCCCAACCAAAGACATAGATGTGAAAGATATTTATAATGGCGCTTCAGATGAAATGCTTCTGAATATGCGACTTGTCAGATTACTGTCTTTGACATTTGTCAACGCTTCAAGAAACCTCTTTGAAGGTGCTTTGGAGAAACACAATTTAATCATTAAGCTCATTGCATTAAAGGAGGAGGAAGATTGCTATAGAGAAGAAGCAAACATTCAGAAAGATTCAATGCAGAATGAATTGAAAAAGTCTCTCTTTGAAAAGGCGATAAAGGAAAAGCTGTATTCATGGCTTCTTCGAAAGATAGCTGAAGACAGTAAAGGGCCTAACGTGTTGGATGACAAGGGGCAAGGGGTACTTCATTTGGCAGCTGCTCTTGGTTATGACTGGGCGTTGAAACCAATTGTGACTGCAGGAGTTAGTATCAATTTTCGTGATGATAATGGATGGACAGCTCTTCATTGGGCAGCGTTCTGTGGCAGAGAGCAGACAATTGCAGTCCTGATCTCTCTGGGTGCATCTACTGGGGTATTGACAGATCCATCTCCAGATCATCCTTTAGGTAGAACCCCGGCAGACCTTGCATCCTCCAATGGGCACAAAGGAATCTCCGGTTTCCTAGCAGAGTCTTCATTGACCAGCTATCTCGAATCTCTAAAAATGACTGATTCAAAGGAAGATGGCACCTTAGAAGCTTCGGCCCCAAAACCTGTACAAACGGTTTCAGACAGGATGCCAACACCTATCATTGGTGGTTATAACCCATATGAGCTGTCACTCAAGGATTCGCTTACGGCCGTCTGTAACGCTACACAGGCTGCTGATCGTATATATCAGATGTTCAGGATCCAGTCGTTCCAGAGGAAACAACTAACAGAGGAGAATGGAGATGATGAATTTGGTCTCTCAGAAGAACAGGCCTTTTCGGTTGTTTCTGCCAGGGTCCGTAAGCCTGGACAAGGTTTTGGACAAGTCCATGCTGCTGCTGTTCAGATACAGAAAAAGTTCCGTGGTTGGAAGAAGAGAAAAGAATTCCTCATTATTCGTCAAAGAATTGTTAAAATTCAGGCCCATATAAGGGGACACCAGGTAAGGAAGCAATATAGGACGATCATCTGGTCTGTAGGCATTCTGGAGAAGATTATATTGCGATGGAGACGTAAAGGGAGTGGATTACGAGGCTTCAAGCCAGATGCAGTTGCTAAGGAACCCAACCCAGAGACCAAGCCAGCTAAATCTAAAGAGGATGATTATGATTTTCTCAAGGAAGGAAGAAGACAAACAGAGGAAAGGTTGCAAAAGGCGCTCACTAGGGTTAAGTCTATGGCTCAGTATCCGGAAGGACGCGATCAGTACCGTAGGCTACTTACCGTTGTTCACGGCTTCCCTGAAACAAATGTGTCAGGTATGGCTATTACTAGTCCAGATCAGGAAATTCCATACGGAGATGAGGATGAGGACCTGATTGATATCGACACAATACTGGACGATGACACTCTAATGTCCATAACATTTAATTTAAAAGTCTGA 3183 42.26 MAELGSYGLGPRLDIKQLQIEAQNRWLRPAEVCEILCNYQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEENLTHIVFVHYLQVKGNRTYTGSAKETDEVSSTSSIGGPSSSSSPTSHTRATFGNVDPPSSSSTMTSLYEDADSEDHQATSKINSFPGSLRTGNGPLMDKMDGRTSGLYYLSEIQKDVYSDNNGGINMVNSQKTLGSASWEEIFKQSMTDIPSHVSTLGQQNIIPGKLMGNTAVKEYGLQWQIPLEDFPEGPVDQLSDLESLYEIRNRLFEPGNHDDIYGSNPRIINTHPDMQNHQLLPNDLHIQLTNDESQFPMKLSSENDIPVKGNLPYPLTFKQSLLDGEEGLKKVDSFSRWVSKELKELGEVDDLRMESSSGISWTTVECRDIIGDSSLSPSLSQDQLFSIRSFSPKWTYTDSEAEVLIIGRYLGSQQGIAAINWSCMFGEVEVPAEVLADGILCCRAPPHSVGQVPFYITCSNRVACSEVREFEYLAGPTKDIDVKDIYNGASDEMLLNMRLVRLLSLTFVNASRNLFEGALEKHNLIIKLIALKEEEDCYREEANIQKDSMQNELKKSLFEKAIKEKLYSWLLRKIAEDSKGPNVLDDKGQGVLHLAAALGYDWALKPIVTAGVSINFRDDNGWTALHWAAFCGREQTIAVLISLGASTGVLTDPSPDHPLGRTPADLASSNGHKGISGFLAESSLTSYLESLKMTDSKEDGTLEASAPKPVQTVSDRMPTPIIGGYNPYELSLKDSLTAVCNATQAADRIYQMFRIQSFQRKQLTEENGDDEFGLSEEQAFSVVSARVRKPGQGFGQVHAAAVQIQKKFRGWKKRKEFLIIRQRIVKIQAHIRGHQVRKQYRTIIWSVGILEKIILRWRRKGSGLRGFKPDAVAKEPNPETKPAKSKEDDYDFLKEGRRQTEERLQKALTRVKSMAQYPEGRDQYRRLLTVVHGFPETNVSGMAITSPDQEIPYGDEDEDLIDIDTILDDDTLMSITFNLKV 1060
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8367766 8374980 + Conep12aG0099900.1 Cone12ag0971 449815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0971 1060 Gene3D Immunoglobulins 459 557 IPR013783 -
Cone12ag0971 1060 ProSiteProfiles Ankyrin repeat profile. 666 698 IPR002110 GO:0005515(InterPro)
Cone12ag0971 1060 ProSiteProfiles IQ motif profile. 877 905 - -
Cone12ag0971 1060 SMART ANK_2a 666 695 IPR002110 GO:0005515(InterPro)
Cone12ag0971 1060 SMART ANK_2a 699 728 IPR002110 GO:0005515(InterPro)
Cone12ag0971 1060 SMART ANK_2a 738 767 IPR002110 GO:0005515(InterPro)
Cone12ag0971 1060 ProSiteProfiles Ankyrin repeat region circular profile. 699 725 - -
Cone12ag0971 1060 Coils Coil 962 989 - -
Cone12ag0971 1060 MobiDBLite consensus disorder prediction 777 797 - -
Cone12ag0971 1060 Pfam IPT/TIG domain 465 539 IPR002909 -
Cone12ag0971 1060 SMART iq_5 875 897 IPR000048 GO:0005515(InterPro)
Cone12ag0971 1060 SMART iq_5 898 920 IPR000048 GO:0005515(InterPro)
Cone12ag0971 1060 Pfam IQ calmodulin-binding motif 877 896 IPR000048 GO:0005515(InterPro)
Cone12ag0971 1060 Pfam IQ calmodulin-binding motif 901 920 IPR000048 GO:0005515(InterPro)
Cone12ag0971 1060 Pfam Ankyrin repeats (3 copies) 671 760 IPR002110 GO:0005515(InterPro)
Cone12ag0971 1060 FunFam Calmodulin-binding transcription activator 2 875 923 - -
Cone12ag0971 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 874 926 IPR027417 -
Cone12ag0971 1060 SUPERFAMILY E set domains 466 551 IPR014756 -
Cone12ag0971 1060 Coils Coil 618 638 - -
Cone12ag0971 1060 CDD IPT 465 552 - -
Cone12ag0971 1060 Gene3D - 621 768 IPR036770 -
Cone12ag0971 1060 ProSiteProfiles Ankyrin repeat profile. 699 731 IPR002110 GO:0005515(InterPro)
Cone12ag0971 1060 MobiDBLite consensus disorder prediction 144 190 - -
Cone12ag0971 1060 FunFam Calmodulin-binding transcription activator 2 459 555 - -
Cone12ag0971 1060 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1007 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cone12ag0971 1060 Pfam CG-1 domain 21 134 IPR005559 GO:0003677(InterPro)
Cone12ag0971 1060 SMART CG_1_2 18 136 IPR005559 GO:0003677(InterPro)
Cone12ag0971 1060 ProSiteProfiles IQ motif profile. 899 923 - -
Cone12ag0971 1060 MobiDBLite consensus disorder prediction 144 218 - -
Cone12ag0971 1060 SUPERFAMILY Ankyrin repeat 657 760 IPR036770 -
Cone12ag0971 1060 Gene3D - 875 923 - -
Cone12ag0971 1060 MobiDBLite consensus disorder prediction 951 970 - -
Cone12ag0971 1060 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677(InterPro)
Cone12ag0971 1060 MobiDBLite consensus disorder prediction 945 970 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0235 Cone-Chr12:1254158 Cone12ag0971 Cone-Chr12:8367766 2.53E-244 dispersed
Cone12ag0971 Cone-Chr12:8367766 Cone8ag0227 Cone-Chr8:1250902 1.48E-238 dispersed
Cone12ag0971 Cone-Chr12:8367766 Cone8ag1005 Cone-Chr8:9380148 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44493 PF00664 ABC_membrane 8.10E-25 CL0241 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0971 K21596 - csv:101203707 1276.92