Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone12ag0971 | ATGGCGGAGCTTGGATCTTATGGATTAGGTCCTCGTTTAGATATTAAACAATTACAAATAGAAGCTCAAAATAGATGGTTGCGGCCAGCCGAAGTTTGTGAAATTCTCTGCAATTATCAGAAGTTTCATATTGCATCAGAGCCTCCAAACAGACCACCGAGTGGTTCACTTTTTCTTTTTGATCGGAAGGTGTTAAGATACTTTAGAAAGGATGGTCATAATTGGAGGAAGAAAAAAGATGGCAAGACGGTGAAGGAAGCTCATGAGAAATTGAAGGTTGGAAGTGTTGATGTATTACACTGCTACTATGCTCATGGAGAAGAAAATGAAAACTTTCAAAGGCGTAGCTATTGGATGCTTGAAGAGAATTTGACGCACATTGTTTTTGTTCACTACTTGCAAGTTAAGGGTAATAGAACCTATACTGGCTCTGCTAAAGAGACTGATGAAGTCTCGTCAACTTCCTCAATCGGCGGTCCTAGTAGTTCCAGCTCTCCTACAAGTCACACTAGAGCCACATTTGGAAATGTGGACCCCCCCAGCTCATCTAGTACCATGACTTCATTATATGAAGATGCTGATTCTGAAGATCACCAAGCAACTTCAAAAATCAATTCCTTTCCAGGGTCACTACGAACGGGAAATGGCCCTCTGATGGATAAGATGGATGGCAGAACCTCAGGATTATATTATCTATCAGAAATCCAGAAAGATGTTTACAGTGATAATAATGGAGGTATTAATATGGTCAACTCTCAAAAAACACTTGGTTCGGCATCTTGGGAAGAGATCTTCAAACAATCTATGACAGATATACCATCCCATGTTTCAACTCTCGGACAACAAAATATTATCCCAGGCAAATTAATGGGCAATACTGCCGTCAAGGAGTATGGGCTCCAGTGGCAGATTCCTCTTGAAGACTTCCCAGAGGGACCAGTGGACCAGTTGTCAGATTTAGAATCTTTGTATGAAATACGTAACAGATTATTTGAGCCAGGAAATCATGATGATATTTATGGAAGTAATCCTAGAATAATTAATACTCATCCAGATATGCAAAACCATCAACTGCTACCAAATGACCTCCATATACAGCTTACCAATGATGAATCTCAATTCCCAATGAAATTGAGTTCTGAGAATGATATCCCCGTCAAAGGAAATTTGCCCTACCCTTTGACTTTCAAACAGTCATTACTTGATGGAGAAGAAGGTTTGAAGAAGGTGGACAGCTTCTCTAGGTGGGTAAGTAAAGAACTTAAAGAACTTGGGGAGGTAGATGATTTGCGTATGGAGTCATCATCTGGTATTTCTTGGACCACTGTTGAATGTAGAGATATCATTGGTGATTCGTCATTGAGCCCCTCTCTCTCTCAAGACCAACTCTTCAGCATAAGAAGTTTTTCACCAAAGTGGACATACACGGACTCGGAAGCTGAGGTTTTGATTATAGGAAGATATTTGGGCTCTCAACAAGGAATTGCAGCTATCAACTGGTCTTGTATGTTTGGGGAAGTAGAAGTTCCTGCCGAGGTTTTGGCTGATGGAATTCTTTGTTGCCGTGCTCCACCTCATAGTGTTGGGCAAGTTCCTTTTTACATAACATGCTCCAATAGAGTTGCTTGCAGTGAAGTGCGAGAATTTGAGTACCTAGCTGGCCCAACCAAAGACATAGATGTGAAAGATATTTATAATGGCGCTTCAGATGAAATGCTTCTGAATATGCGACTTGTCAGATTACTGTCTTTGACATTTGTCAACGCTTCAAGAAACCTCTTTGAAGGTGCTTTGGAGAAACACAATTTAATCATTAAGCTCATTGCATTAAAGGAGGAGGAAGATTGCTATAGAGAAGAAGCAAACATTCAGAAAGATTCAATGCAGAATGAATTGAAAAAGTCTCTCTTTGAAAAGGCGATAAAGGAAAAGCTGTATTCATGGCTTCTTCGAAAGATAGCTGAAGACAGTAAAGGGCCTAACGTGTTGGATGACAAGGGGCAAGGGGTACTTCATTTGGCAGCTGCTCTTGGTTATGACTGGGCGTTGAAACCAATTGTGACTGCAGGAGTTAGTATCAATTTTCGTGATGATAATGGATGGACAGCTCTTCATTGGGCAGCGTTCTGTGGCAGAGAGCAGACAATTGCAGTCCTGATCTCTCTGGGTGCATCTACTGGGGTATTGACAGATCCATCTCCAGATCATCCTTTAGGTAGAACCCCGGCAGACCTTGCATCCTCCAATGGGCACAAAGGAATCTCCGGTTTCCTAGCAGAGTCTTCATTGACCAGCTATCTCGAATCTCTAAAAATGACTGATTCAAAGGAAGATGGCACCTTAGAAGCTTCGGCCCCAAAACCTGTACAAACGGTTTCAGACAGGATGCCAACACCTATCATTGGTGGTTATAACCCATATGAGCTGTCACTCAAGGATTCGCTTACGGCCGTCTGTAACGCTACACAGGCTGCTGATCGTATATATCAGATGTTCAGGATCCAGTCGTTCCAGAGGAAACAACTAACAGAGGAGAATGGAGATGATGAATTTGGTCTCTCAGAAGAACAGGCCTTTTCGGTTGTTTCTGCCAGGGTCCGTAAGCCTGGACAAGGTTTTGGACAAGTCCATGCTGCTGCTGTTCAGATACAGAAAAAGTTCCGTGGTTGGAAGAAGAGAAAAGAATTCCTCATTATTCGTCAAAGAATTGTTAAAATTCAGGCCCATATAAGGGGACACCAGGTAAGGAAGCAATATAGGACGATCATCTGGTCTGTAGGCATTCTGGAGAAGATTATATTGCGATGGAGACGTAAAGGGAGTGGATTACGAGGCTTCAAGCCAGATGCAGTTGCTAAGGAACCCAACCCAGAGACCAAGCCAGCTAAATCTAAAGAGGATGATTATGATTTTCTCAAGGAAGGAAGAAGACAAACAGAGGAAAGGTTGCAAAAGGCGCTCACTAGGGTTAAGTCTATGGCTCAGTATCCGGAAGGACGCGATCAGTACCGTAGGCTACTTACCGTTGTTCACGGCTTCCCTGAAACAAATGTGTCAGGTATGGCTATTACTAGTCCAGATCAGGAAATTCCATACGGAGATGAGGATGAGGACCTGATTGATATCGACACAATACTGGACGATGACACTCTAATGTCCATAACATTTAATTTAAAAGTCTGA | 3183 | 42.26 | MAELGSYGLGPRLDIKQLQIEAQNRWLRPAEVCEILCNYQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEENLTHIVFVHYLQVKGNRTYTGSAKETDEVSSTSSIGGPSSSSSPTSHTRATFGNVDPPSSSSTMTSLYEDADSEDHQATSKINSFPGSLRTGNGPLMDKMDGRTSGLYYLSEIQKDVYSDNNGGINMVNSQKTLGSASWEEIFKQSMTDIPSHVSTLGQQNIIPGKLMGNTAVKEYGLQWQIPLEDFPEGPVDQLSDLESLYEIRNRLFEPGNHDDIYGSNPRIINTHPDMQNHQLLPNDLHIQLTNDESQFPMKLSSENDIPVKGNLPYPLTFKQSLLDGEEGLKKVDSFSRWVSKELKELGEVDDLRMESSSGISWTTVECRDIIGDSSLSPSLSQDQLFSIRSFSPKWTYTDSEAEVLIIGRYLGSQQGIAAINWSCMFGEVEVPAEVLADGILCCRAPPHSVGQVPFYITCSNRVACSEVREFEYLAGPTKDIDVKDIYNGASDEMLLNMRLVRLLSLTFVNASRNLFEGALEKHNLIIKLIALKEEEDCYREEANIQKDSMQNELKKSLFEKAIKEKLYSWLLRKIAEDSKGPNVLDDKGQGVLHLAAALGYDWALKPIVTAGVSINFRDDNGWTALHWAAFCGREQTIAVLISLGASTGVLTDPSPDHPLGRTPADLASSNGHKGISGFLAESSLTSYLESLKMTDSKEDGTLEASAPKPVQTVSDRMPTPIIGGYNPYELSLKDSLTAVCNATQAADRIYQMFRIQSFQRKQLTEENGDDEFGLSEEQAFSVVSARVRKPGQGFGQVHAAAVQIQKKFRGWKKRKEFLIIRQRIVKIQAHIRGHQVRKQYRTIIWSVGILEKIILRWRRKGSGLRGFKPDAVAKEPNPETKPAKSKEDDYDFLKEGRRQTEERLQKALTRVKSMAQYPEGRDQYRRLLTVVHGFPETNVSGMAITSPDQEIPYGDEDEDLIDIDTILDDDTLMSITFNLKV | 1060 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 8367766 | 8374980 | + | Conep12aG0099900.1 | Cone12ag0971 | 449815 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone12ag0971 | 1060 | Gene3D | Immunoglobulins | 459 | 557 | IPR013783 | - | |
Cone12ag0971 | 1060 | ProSiteProfiles | Ankyrin repeat profile. | 666 | 698 | IPR002110 | GO:0005515(InterPro) | |
Cone12ag0971 | 1060 | ProSiteProfiles | IQ motif profile. | 877 | 905 | - | - | |
Cone12ag0971 | 1060 | SMART | ANK_2a | 666 | 695 | IPR002110 | GO:0005515(InterPro) | |
Cone12ag0971 | 1060 | SMART | ANK_2a | 699 | 728 | IPR002110 | GO:0005515(InterPro) | |
Cone12ag0971 | 1060 | SMART | ANK_2a | 738 | 767 | IPR002110 | GO:0005515(InterPro) | |
Cone12ag0971 | 1060 | ProSiteProfiles | Ankyrin repeat region circular profile. | 699 | 725 | - | - | |
Cone12ag0971 | 1060 | Coils | Coil | 962 | 989 | - | - | |
Cone12ag0971 | 1060 | MobiDBLite | consensus disorder prediction | 777 | 797 | - | - | |
Cone12ag0971 | 1060 | Pfam | IPT/TIG domain | 465 | 539 | IPR002909 | - | |
Cone12ag0971 | 1060 | SMART | iq_5 | 875 | 897 | IPR000048 | GO:0005515(InterPro) | |
Cone12ag0971 | 1060 | SMART | iq_5 | 898 | 920 | IPR000048 | GO:0005515(InterPro) | |
Cone12ag0971 | 1060 | Pfam | IQ calmodulin-binding motif | 877 | 896 | IPR000048 | GO:0005515(InterPro) | |
Cone12ag0971 | 1060 | Pfam | IQ calmodulin-binding motif | 901 | 920 | IPR000048 | GO:0005515(InterPro) | |
Cone12ag0971 | 1060 | Pfam | Ankyrin repeats (3 copies) | 671 | 760 | IPR002110 | GO:0005515(InterPro) | |
Cone12ag0971 | 1060 | FunFam | Calmodulin-binding transcription activator 2 | 875 | 923 | - | - | |
Cone12ag0971 | 1060 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 874 | 926 | IPR027417 | - | |
Cone12ag0971 | 1060 | SUPERFAMILY | E set domains | 466 | 551 | IPR014756 | - | |
Cone12ag0971 | 1060 | Coils | Coil | 618 | 638 | - | - | |
Cone12ag0971 | 1060 | CDD | IPT | 465 | 552 | - | - | |
Cone12ag0971 | 1060 | Gene3D | - | 621 | 768 | IPR036770 | - | |
Cone12ag0971 | 1060 | ProSiteProfiles | Ankyrin repeat profile. | 699 | 731 | IPR002110 | GO:0005515(InterPro) | |
Cone12ag0971 | 1060 | MobiDBLite | consensus disorder prediction | 144 | 190 | - | - | |
Cone12ag0971 | 1060 | FunFam | Calmodulin-binding transcription activator 2 | 459 | 555 | - | - | |
Cone12ag0971 | 1060 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA | 14 | 1007 | - | GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) | |
Cone12ag0971 | 1060 | Pfam | CG-1 domain | 21 | 134 | IPR005559 | GO:0003677(InterPro) | |
Cone12ag0971 | 1060 | SMART | CG_1_2 | 18 | 136 | IPR005559 | GO:0003677(InterPro) | |
Cone12ag0971 | 1060 | ProSiteProfiles | IQ motif profile. | 899 | 923 | - | - | |
Cone12ag0971 | 1060 | MobiDBLite | consensus disorder prediction | 144 | 218 | - | - | |
Cone12ag0971 | 1060 | SUPERFAMILY | Ankyrin repeat | 657 | 760 | IPR036770 | - | |
Cone12ag0971 | 1060 | Gene3D | - | 875 | 923 | - | - | |
Cone12ag0971 | 1060 | MobiDBLite | consensus disorder prediction | 951 | 970 | - | - | |
Cone12ag0971 | 1060 | ProSiteProfiles | CG-1 DNA-binding domain profile. | 15 | 141 | IPR005559 | GO:0003677(InterPro) | |
Cone12ag0971 | 1060 | MobiDBLite | consensus disorder prediction | 945 | 970 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag0235 | Cone-Chr12:1254158 | Cone12ag0971 | Cone-Chr12:8367766 | 2.53E-244 | dispersed | |
Cone12ag0971 | Cone-Chr12:8367766 | Cone8ag0227 | Cone-Chr8:1250902 | 1.48E-238 | dispersed | |
Cone12ag0971 | Cone-Chr12:8367766 | Cone8ag1005 | Cone-Chr8:9380148 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44493 | PF00664 | ABC_membrane | 8.10E-25 | CL0241 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone12ag0971 | K21596 | - | csv:101203707 | 1276.92 |