Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0971 ATGGCGGAGCTTGGATCTTATGGATTAGGTCCTCGTTTAGATATTAAACAATTACAAATAGAAGCTCAAAATAGATGGTTGCGGCCAGCCGAAGTTTGTGAAATTCTCTGCAATTATCAGAAGTTTCATATTGCATCAGAGCCTCCAAACAGACCACCGAGTGGTTCACTTTTTCTTTTTGATCGGAAGGTGTTAAGATACTTTAGAAAGGATGGTCATAATTGGAGGAAGAAAAAAGATGGCAAGACGGTGAAGGAAGCTCATGAGAAATTGAAGGTTGGAAGTGTTGATGTATTACACTGCTACTATGCTCATGGAGAAGAAAATGAAAACTTTCAAAGGCGTAGCTATTGGATGCTTGAAGAGAATTTGACGCACATTGTTTTTGTTCACTACTTGCAAGTTAAGGGTAATAGAACCTATACTGGCTCTGCTAAAGAGACTGATGAAGTCTCGTCAACTTCCTCAATCGGCGGTCCTAGTAGTTCCAGCTCTCCTACAAGTCACACTAGAGCCACATTTGGAAATGTGGACCCCCCCAGCTCATCTAGTACCATGACTTCATTATATGAAGATGCTGATTCTGAAGATCACCAAGCAACTTCAAAAATCAATTCCTTTCCAGGGTCACTACGAACGGGAAATGGCCCTCTGATGGATAAGATGGATGGCAGAACCTCAGGATTATATTATCTATCAGAAATCCAGAAAGATGTTTACAGTGATAATAATGGAGGTATTAATATGGTCAACTCTCAAAAAACACTTGGTTCGGCATCTTGGGAAGAGATCTTCAAACAATCTATGACAGATATACCATCCCATGTTTCAACTCTCGGACAACAAAATATTATCCCAGGCAAATTAATGGGCAATACTGCCGTCAAGGAGTATGGGCTCCAGTGGCAGATTCCTCTTGAAGACTTCCCAGAGGGACCAGTGGACCAGTTGTCAGATTTAGAATCTTTGTATGAAATACGTAACAGATTATTTGAGCCAGGAAATCATGATGATATTTATGGAAGTAATCCTAGAATAATTAATACTCATCCAGATATGCAAAACCATCAACTGCTACCAAATGACCTCCATATACAGCTTACCAATGATGAATCTCAATTCCCAATGAAATTGAGTTCTGAGAATGATATCCCCGTCAAAGGAAATTTGCCCTACCCTTTGACTTTCAAACAGTCATTACTTGATGGAGAAGAAGGTTTGAAGAAGGTGGACAGCTTCTCTAGGTGGGTAAGTAAAGAACTTAAAGAACTTGGGGAGGTAGATGATTTGCGTATGGAGTCATCATCTGGTATTTCTTGGACCACTGTTGAATGTAGAGATATCATTGGTGATTCGTCATTGAGCCCCTCTCTCTCTCAAGACCAACTCTTCAGCATAAGAAGTTTTTCACCAAAGTGGACATACACGGACTCGGAAGCTGAGGTTTTGATTATAGGAAGATATTTGGGCTCTCAACAAGGAATTGCAGCTATCAACTGGTCTTGTATGTTTGGGGAAGTAGAAGTTCCTGCCGAGGTTTTGGCTGATGGAATTCTTTGTTGCCGTGCTCCACCTCATAGTGTTGGGCAAGTTCCTTTTTACATAACATGCTCCAATAGAGTTGCTTGCAGTGAAGTGCGAGAATTTGAGTACCTAGCTGGCCCAACCAAAGACATAGATGTGAAAGATATTTATAATGGCGCTTCAGATGAAATGCTTCTGAATATGCGACTTGTCAGATTACTGTCTTTGACATTTGTCAACGCTTCAAGAAACCTCTTTGAAGGTGCTTTGGAGAAACACAATTTAATCATTAAGCTCATTGCATTAAAGGAGGAGGAAGATTGCTATAGAGAAGAAGCAAACATTCAGAAAGATTCAATGCAGAATGAATTGAAAAAGTCTCTCTTTGAAAAGGCGATAAAGGAAAAGCTGTATTCATGGCTTCTTCGAAAGATAGCTGAAGACAGTAAAGGGCCTAACGTGTTGGATGACAAGGGGCAAGGGGTACTTCATTTGGCAGCTGCTCTTGGTTATGACTGGGCGTTGAAACCAATTGTGACTGCAGGAGTTAGTATCAATTTTCGTGATGATAATGGATGGACAGCTCTTCATTGGGCAGCGTTCTGTGGCAGAGAGCAGACAATTGCAGTCCTGATCTCTCTGGGTGCATCTACTGGGGTATTGACAGATCCATCTCCAGATCATCCTTTAGGTAGAACCCCGGCAGACCTTGCATCCTCCAATGGGCACAAAGGAATCTCCGGTTTCCTAGCAGAGTCTTCATTGACCAGCTATCTCGAATCTCTAAAAATGACTGATTCAAAGGAAGATGGCACCTTAGAAGCTTCGGCCCCAAAACCTGTACAAACGGTTTCAGACAGGATGCCAACACCTATCATTGGTGGTTATAACCCATATGAGCTGTCACTCAAGGATTCGCTTACGGCCGTCTGTAACGCTACACAGGCTGCTGATCGTATATATCAGATGTTCAGGATCCAGTCGTTCCAGAGGAAACAACTAACAGAGGAGAATGGAGATGATGAATTTGGTCTCTCAGAAGAACAGGCCTTTTCGGTTGTTTCTGCCAGGGTCCGTAAGCCTGGACAAGGTTTTGGACAAGTCCATGCTGCTGCTGTTCAGATACAGAAAAAGTTCCGTGGTTGGAAGAAGAGAAAAGAATTCCTCATTATTCGTCAAAGAATTGTTAAAATTCAGGCCCATATAAGGGGACACCAGGTAAGGAAGCAATATAGGACGATCATCTGGTCTGTAGGCATTCTGGAGAAGATTATATTGCGATGGAGACGTAAAGGGAGTGGATTACGAGGCTTCAAGCCAGATGCAGTTGCTAAGGAACCCAACCCAGAGACCAAGCCAGCTAAATCTAAAGAGGATGATTATGATTTTCTCAAGGAAGGAAGAAGACAAACAGAGGAAAGGTTGCAAAAGGCGCTCACTAGGGTTAAGTCTATGGCTCAGTATCCGGAAGGACGCGATCAGTACCGTAGGCTACTTACCGTTGTTCACGGCTTCCCTGAAACAAATGTGTCAGGTATGGCTATTACTAGTCCAGATCAGGAAATTCCATACGGAGATGAGGATGAGGACCTGATTGATATCGACACAATACTGGACGATGACACTCTAATGTCCATAACATTTAATTTAAAAGTCTGA 3183 42.26 MAELGSYGLGPRLDIKQLQIEAQNRWLRPAEVCEILCNYQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEENLTHIVFVHYLQVKGNRTYTGSAKETDEVSSTSSIGGPSSSSSPTSHTRATFGNVDPPSSSSTMTSLYEDADSEDHQATSKINSFPGSLRTGNGPLMDKMDGRTSGLYYLSEIQKDVYSDNNGGINMVNSQKTLGSASWEEIFKQSMTDIPSHVSTLGQQNIIPGKLMGNTAVKEYGLQWQIPLEDFPEGPVDQLSDLESLYEIRNRLFEPGNHDDIYGSNPRIINTHPDMQNHQLLPNDLHIQLTNDESQFPMKLSSENDIPVKGNLPYPLTFKQSLLDGEEGLKKVDSFSRWVSKELKELGEVDDLRMESSSGISWTTVECRDIIGDSSLSPSLSQDQLFSIRSFSPKWTYTDSEAEVLIIGRYLGSQQGIAAINWSCMFGEVEVPAEVLADGILCCRAPPHSVGQVPFYITCSNRVACSEVREFEYLAGPTKDIDVKDIYNGASDEMLLNMRLVRLLSLTFVNASRNLFEGALEKHNLIIKLIALKEEEDCYREEANIQKDSMQNELKKSLFEKAIKEKLYSWLLRKIAEDSKGPNVLDDKGQGVLHLAAALGYDWALKPIVTAGVSINFRDDNGWTALHWAAFCGREQTIAVLISLGASTGVLTDPSPDHPLGRTPADLASSNGHKGISGFLAESSLTSYLESLKMTDSKEDGTLEASAPKPVQTVSDRMPTPIIGGYNPYELSLKDSLTAVCNATQAADRIYQMFRIQSFQRKQLTEENGDDEFGLSEEQAFSVVSARVRKPGQGFGQVHAAAVQIQKKFRGWKKRKEFLIIRQRIVKIQAHIRGHQVRKQYRTIIWSVGILEKIILRWRRKGSGLRGFKPDAVAKEPNPETKPAKSKEDDYDFLKEGRRQTEERLQKALTRVKSMAQYPEGRDQYRRLLTVVHGFPETNVSGMAITSPDQEIPYGDEDEDLIDIDTILDDDTLMSITFNLKV 1060
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8367766 8374980 + Conep12aG0099900.1 Cone12ag0971 449815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0971 1060 Gene3D Immunoglobulins 459 557 IPR013783 -
Cone12ag0971 1060 ProSiteProfiles Ankyrin repeat profile. 666 698 IPR002110 GO:0005515(InterPro)
Cone12ag0971 1060 ProSiteProfiles IQ motif profile. 877 905 - -
Cone12ag0971 1060 SMART ANK_2a 666 695 IPR002110 GO:0005515(InterPro)
Cone12ag0971 1060 SMART ANK_2a 699 728 IPR002110 GO:0005515(InterPro)
Cone12ag0971 1060 SMART ANK_2a 738 767 IPR002110 GO:0005515(InterPro)
Cone12ag0971 1060 ProSiteProfiles Ankyrin repeat region circular profile. 699 725 - -
Cone12ag0971 1060 Coils Coil 962 989 - -
Cone12ag0971 1060 MobiDBLite consensus disorder prediction 777 797 - -
Cone12ag0971 1060 Pfam IPT/TIG domain 465 539 IPR002909 -
Cone12ag0971 1060 SMART iq_5 875 897 IPR000048 GO:0005515(InterPro)
Cone12ag0971 1060 SMART iq_5 898 920 IPR000048 GO:0005515(InterPro)
Cone12ag0971 1060 Pfam IQ calmodulin-binding motif 877 896 IPR000048 GO:0005515(InterPro)
Cone12ag0971 1060 Pfam IQ calmodulin-binding motif 901 920 IPR000048 GO:0005515(InterPro)
Cone12ag0971 1060 Pfam Ankyrin repeats (3 copies) 671 760 IPR002110 GO:0005515(InterPro)
Cone12ag0971 1060 FunFam Calmodulin-binding transcription activator 2 875 923 - -
Cone12ag0971 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 874 926 IPR027417 -
Cone12ag0971 1060 SUPERFAMILY E set domains 466 551 IPR014756 -
Cone12ag0971 1060 Coils Coil 618 638 - -
Cone12ag0971 1060 CDD IPT 465 552 - -
Cone12ag0971 1060 Gene3D - 621 768 IPR036770 -
Cone12ag0971 1060 ProSiteProfiles Ankyrin repeat profile. 699 731 IPR002110 GO:0005515(InterPro)
Cone12ag0971 1060 MobiDBLite consensus disorder prediction 144 190 - -
Cone12ag0971 1060 FunFam Calmodulin-binding transcription activator 2 459 555 - -
Cone12ag0971 1060 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1007 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cone12ag0971 1060 Pfam CG-1 domain 21 134 IPR005559 GO:0003677(InterPro)
Cone12ag0971 1060 SMART CG_1_2 18 136 IPR005559 GO:0003677(InterPro)
Cone12ag0971 1060 ProSiteProfiles IQ motif profile. 899 923 - -
Cone12ag0971 1060 MobiDBLite consensus disorder prediction 144 218 - -
Cone12ag0971 1060 SUPERFAMILY Ankyrin repeat 657 760 IPR036770 -
Cone12ag0971 1060 Gene3D - 875 923 - -
Cone12ag0971 1060 MobiDBLite consensus disorder prediction 951 970 - -
Cone12ag0971 1060 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677(InterPro)
Cone12ag0971 1060 MobiDBLite consensus disorder prediction 945 970 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0971 K21596 - - csv:101203707 1276.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0235 Cone-Chr12:1254158 Cone12ag0971 Cone-Chr12:8367766 2.53E-244 dispersed
Cone12ag0971 Cone-Chr12:8367766 Cone8ag0227 Cone-Chr8:1250902 1.48E-238 dispersed
Cone12ag0971 Cone-Chr12:8367766 Cone8ag1005 Cone-Chr8:9380148 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone12ag0971 . 1 1056 CAMTA Transcription Factor Family AT5G64220 54.4 2.6e-279 959.1
Cone8ag1005 . 1 1062 CAMTA Transcription Factor Family AT5G64220 53.4 4.4e-271 931.8
Cone14ag0610 . 6 944 CAMTA Transcription Factor Family AT1G67310 53.6 2.0e-265 912.9
Cone15ag0616 . 6 971 CAMTA Transcription Factor Family AT1G67310 51.7 6.6e-264 907.9
Cone14ag0727 . 1 875 CAMTA Transcription Factor Family AT3G16940 52.6 6.1e-252 867.8
Cone14ag0727 . 1 602 CAMTA Transcription Factor Family AT4G16150 52.4 2.0e-182 637.1
Cone12ag0971 . 1 1056 CAMTA Transcription Factor Family AT5G64220 54.4 2.6e-279 959.1
Cone8ag1005 . 1 1062 CAMTA Transcription Factor Family AT5G64220 53.4 4.4e-271 931.8
Cone14ag0610 . 6 944 CAMTA Transcription Factor Family AT1G67310 53.6 2.0e-265 912.9
Cone15ag0616 . 6 971 CAMTA Transcription Factor Family AT1G67310 51.7 6.6e-264 907.9
Cone14ag0727 . 1 602 CAMTA Transcription Factor Family AT4G16150 52.4 2.0e-182 637.1
Cone14ag0727 . 1 875 CAMTA Transcription Factor Family AT3G16940 52.6 6.1e-252 867.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44493 PF00664 ABC_membrane 8.10E-25 CL0241 Cone TF