Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0982 ATGGGCTTGAATTCGGAGGCTCCGGATAATCCTCCAAGTTCCGTCAAGGCCTTGGCTGCATTTCTAATTCGACGCCACTCTGACCAGCTGCGATCAATCGTTCTCTCCCTTGACTCGAAACTCCATTATCCTCTCTTCGTTGATTTTGGTGAGTTGATGGACGACGATCCTTCTCTAGCGCGACTCATCTTCTCACAACCTGCTGATTACTTGCGCTTATTTGACGATGCTGCTATATGGGCTCATAAAATTATATTGGGGGACTGGAAAGGTAGCGATGAAGGAATTAGGAAGGATTTCATCCACGTGCGCATCAGCATTAGCGGCTCTCCTCTAGAATGCACTGAGACTTTTCCGGGCATTGGATCGGTGAGAGTGAAGCACCGTGGGATTCTTCTCACACTCAAAGGCACAGTGATTAGGTCAGGAGCAATCAAGATGTTTGAAGGGGAGAGATGGTTTATGAGCAGGAAATGCAAGAACAAGTGGGTTTTGCCATTCTTATTGACTAAGAGCTGTGAAGGTAAATATTTTGAGTGCCTAGAAGGTTCTATAGTACGCCATGATTATCAAGAAATCAAAATTCAGGAAAATACACAAGTATTAGGTGTTGGATCCATCCCTCGATCAATTCCTGTCATTCTGAAGGATGATCTTGTTGATATTGTTAAAGCTGGAGATGATGTTATAGTTACTGGGATCTTGAGCGCAAAGTGGTCTCCAGACTTGAAAGATGTGCGGTGTGATCTTGATCCCATGTTAATTGCTAATCATATCAGGAGAACTAATGAGCGGAAGTCAGACATTGATATTCCTGATGATGTTATAATGGAGTTCAAAAAATTCTGGTCACACTTCAAAGATGCTCCATTAAAAGGAAGCACTAGTGATGGTTTAACTGTTGCTGCTGTCAAGGATGGAGGGGAATGGATGTTGGGAGGTGGAGCACTTGTTCTGGCAGATGGAGGGCTCTGCTGCATAGATGAAGTGGACAGCATGAGAGAACATGACAGGGCGACCATACACGAAGCAATGGAGCAGCAGACTATAAGTGTTGCCAAGGCTGGACTCGTTACAACTCTCAATACCAGGACAGCAGTATTCGGTGCTACAAATCCTAAAGGACATTACGATCCCGTATCCTATTTCACTTGGCATATAACTACTCTGTCCGTCAGGACAACACTCTCTGGTCCATTATTGAGCAGATTTGACATCGTTCTTGTCCTCTTAGATACAAAGAATCCCGAATGGGACGTGGTTGTTTCATCTCACATACTCTCTGAGGCTGAATCAGAGAAAAGGAAGCTCAAAGAAGATATTTTGAATAAATGGCCACTTCCTATGCTCCGGAGGTATATTCAATTTGTAAAAGGATGCTTCAGACCGGTCCTGACCAAAGAATCAGAAAAGATAATATCAAACTATTATCAGCTCCAAAGAAGATCAGCAACTGATAATGCAGCTAGAACAACCGTACGCATGCTTGAAAGTTTGATACGCCTTGCTCAAGCCGACGAATCCCCTGGCTTACTCCCTGCTGACATGGACAGTGACTTGATGATCAGAAAGTACACGCCACCAGCCCTGGCAGTGGTGCTGGGCGTGGCTGGAGCGATTAGGGTCTCACTAATGGTCAACCAGTAA 1647 44.69 MGLNSEAPDNPPSSVKALAAFLIRRHSDQLRSIVLSLDSKLHYPLFVDFGELMDDDPSLARLIFSQPADYLRLFDDAAIWAHKIILGDWKGSDEGIRKDFIHVRISISGSPLECTETFPGIGSVRVKHRGILLTLKGTVIRSGAIKMFEGERWFMSRKCKNKWVLPFLLTKSCEGKYFECLEGSIVRHDYQEIKIQENTQVLGVGSIPRSIPVILKDDLVDIVKAGDDVIVTGILSAKWSPDLKDVRCDLDPMLIANHIRRTNERKSDIDIPDDVIMEFKKFWSHFKDAPLKGSTSDGLTVAAVKDGGEWMLGGGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLNTRTAVFGATNPKGHYDPVSYFTWHITTLSVRTTLSGPLLSRFDIVLVLLDTKNPEWDVVVSSHILSEAESEKRKLKEDILNKWPLPMLRRYIQFVKGCFRPVLTKESEKIISNYYQLQRRSATDNAARTTVRMLESLIRLAQADESPGLLPADMDSDLMIRKYTPPALAVVLGVAGAIRVSLMVNQ 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8412224 8416032 + Conep12aG0101000.1 Cone12ag0982 449826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0982 548 SMART mcm 117 526 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone12ag0982 548 Gene3D - 284 506 IPR027417 -
Cone12ag0982 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 505 IPR027417 -
Cone12ag0982 548 PRINTS Mini-chromosome maintenance (MCM) protein family signature 343 356 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone12ag0982 548 PRINTS Mini-chromosome maintenance (MCM) protein family signature 46 61 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone12ag0982 548 PRINTS Mini-chromosome maintenance (MCM) protein family signature 315 329 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone12ag0982 548 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 292 505 IPR031327 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)
Cone12ag0982 548 SUPERFAMILY Nucleic acid-binding proteins 41 244 IPR012340 -
Cone12ag0982 548 ProSiteProfiles MCM family domain profile. 292 426 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone12ag0982 548 Pfam MCM P-loop domain 291 428 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone12ag0982 548 Pfam MCM AAA-lid domain 449 505 IPR041562 -
Cone12ag0982 548 Pfam MCM OB domain 124 237 IPR033762 -
Cone12ag0982 548 Gene3D - 120 264 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0982 Cone-Chr12:8412224 Cone16ag0446 Cone-Chr16:6781760 4.30E-35 dispersed
Cone12ag0982 Cone-Chr12:8412224 Cone8ag1012 Cone-Chr8:9415074 1.28E-294 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0982 K10738 - csv:101205171 452.981