Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone12ag0982 | ATGGGCTTGAATTCGGAGGCTCCGGATAATCCTCCAAGTTCCGTCAAGGCCTTGGCTGCATTTCTAATTCGACGCCACTCTGACCAGCTGCGATCAATCGTTCTCTCCCTTGACTCGAAACTCCATTATCCTCTCTTCGTTGATTTTGGTGAGTTGATGGACGACGATCCTTCTCTAGCGCGACTCATCTTCTCACAACCTGCTGATTACTTGCGCTTATTTGACGATGCTGCTATATGGGCTCATAAAATTATATTGGGGGACTGGAAAGGTAGCGATGAAGGAATTAGGAAGGATTTCATCCACGTGCGCATCAGCATTAGCGGCTCTCCTCTAGAATGCACTGAGACTTTTCCGGGCATTGGATCGGTGAGAGTGAAGCACCGTGGGATTCTTCTCACACTCAAAGGCACAGTGATTAGGTCAGGAGCAATCAAGATGTTTGAAGGGGAGAGATGGTTTATGAGCAGGAAATGCAAGAACAAGTGGGTTTTGCCATTCTTATTGACTAAGAGCTGTGAAGGTAAATATTTTGAGTGCCTAGAAGGTTCTATAGTACGCCATGATTATCAAGAAATCAAAATTCAGGAAAATACACAAGTATTAGGTGTTGGATCCATCCCTCGATCAATTCCTGTCATTCTGAAGGATGATCTTGTTGATATTGTTAAAGCTGGAGATGATGTTATAGTTACTGGGATCTTGAGCGCAAAGTGGTCTCCAGACTTGAAAGATGTGCGGTGTGATCTTGATCCCATGTTAATTGCTAATCATATCAGGAGAACTAATGAGCGGAAGTCAGACATTGATATTCCTGATGATGTTATAATGGAGTTCAAAAAATTCTGGTCACACTTCAAAGATGCTCCATTAAAAGGAAGCACTAGTGATGGTTTAACTGTTGCTGCTGTCAAGGATGGAGGGGAATGGATGTTGGGAGGTGGAGCACTTGTTCTGGCAGATGGAGGGCTCTGCTGCATAGATGAAGTGGACAGCATGAGAGAACATGACAGGGCGACCATACACGAAGCAATGGAGCAGCAGACTATAAGTGTTGCCAAGGCTGGACTCGTTACAACTCTCAATACCAGGACAGCAGTATTCGGTGCTACAAATCCTAAAGGACATTACGATCCCGTATCCTATTTCACTTGGCATATAACTACTCTGTCCGTCAGGACAACACTCTCTGGTCCATTATTGAGCAGATTTGACATCGTTCTTGTCCTCTTAGATACAAAGAATCCCGAATGGGACGTGGTTGTTTCATCTCACATACTCTCTGAGGCTGAATCAGAGAAAAGGAAGCTCAAAGAAGATATTTTGAATAAATGGCCACTTCCTATGCTCCGGAGGTATATTCAATTTGTAAAAGGATGCTTCAGACCGGTCCTGACCAAAGAATCAGAAAAGATAATATCAAACTATTATCAGCTCCAAAGAAGATCAGCAACTGATAATGCAGCTAGAACAACCGTACGCATGCTTGAAAGTTTGATACGCCTTGCTCAAGCCGACGAATCCCCTGGCTTACTCCCTGCTGACATGGACAGTGACTTGATGATCAGAAAGTACACGCCACCAGCCCTGGCAGTGGTGCTGGGCGTGGCTGGAGCGATTAGGGTCTCACTAATGGTCAACCAGTAA | 1647 | 44.69 | MGLNSEAPDNPPSSVKALAAFLIRRHSDQLRSIVLSLDSKLHYPLFVDFGELMDDDPSLARLIFSQPADYLRLFDDAAIWAHKIILGDWKGSDEGIRKDFIHVRISISGSPLECTETFPGIGSVRVKHRGILLTLKGTVIRSGAIKMFEGERWFMSRKCKNKWVLPFLLTKSCEGKYFECLEGSIVRHDYQEIKIQENTQVLGVGSIPRSIPVILKDDLVDIVKAGDDVIVTGILSAKWSPDLKDVRCDLDPMLIANHIRRTNERKSDIDIPDDVIMEFKKFWSHFKDAPLKGSTSDGLTVAAVKDGGEWMLGGGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLNTRTAVFGATNPKGHYDPVSYFTWHITTLSVRTTLSGPLLSRFDIVLVLLDTKNPEWDVVVSSHILSEAESEKRKLKEDILNKWPLPMLRRYIQFVKGCFRPVLTKESEKIISNYYQLQRRSATDNAARTTVRMLESLIRLAQADESPGLLPADMDSDLMIRKYTPPALAVVLGVAGAIRVSLMVNQ | 548 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 8412224 | 8416032 | + | Conep12aG0101000.1 | Cone12ag0982 | 449826 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone12ag0982 | 548 | SMART | mcm | 117 | 526 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
Cone12ag0982 | 548 | Gene3D | - | 284 | 506 | IPR027417 | - | |
Cone12ag0982 | 548 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 308 | 505 | IPR027417 | - | |
Cone12ag0982 | 548 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 343 | 356 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
Cone12ag0982 | 548 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 46 | 61 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
Cone12ag0982 | 548 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 315 | 329 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
Cone12ag0982 | 548 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 292 | 505 | IPR031327 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER) | |
Cone12ag0982 | 548 | SUPERFAMILY | Nucleic acid-binding proteins | 41 | 244 | IPR012340 | - | |
Cone12ag0982 | 548 | ProSiteProfiles | MCM family domain profile. | 292 | 426 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
Cone12ag0982 | 548 | Pfam | MCM P-loop domain | 291 | 428 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
Cone12ag0982 | 548 | Pfam | MCM AAA-lid domain | 449 | 505 | IPR041562 | - | |
Cone12ag0982 | 548 | Pfam | MCM OB domain | 124 | 237 | IPR033762 | - | |
Cone12ag0982 | 548 | Gene3D | - | 120 | 264 | IPR012340 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag0982 | Cone-Chr12:8412224 | Cone16ag0446 | Cone-Chr16:6781760 | 4.30E-35 | dispersed | |
Cone12ag0982 | Cone-Chr12:8412224 | Cone8ag1012 | Cone-Chr8:9415074 | 1.28E-294 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone12ag0982 | K10738 | - | csv:101205171 | 452.981 |