Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0987 ATGGCCCCAACAGCAACTCAAGTTACCCATGAACCCAGCGTTGGTAGTGTCGAAAAGCTATACGAGTCGTCAACCTCTTTCACTGTTCCATCCGTTTTCACCCCAGCAGCTGAATCCCTAAGTGAAGCCATTTCTAAAGTGCTCGAAAGCTCAATCCCAGTTTTCGACATGACCCTTTTAACCACCGGAGATCCTGAACAACGCTCCGAAGCGATCGAACAGCTTGGAAAATACTGTCAGGAATGGGGTTTCTTCCTGGTGATCAATCATGGCGTGCCGGAGAATATGATGAAAGAAACGATCGACGTTTGTCAAGGATTCTTCGTTATGACGGAGGAGGAGAAGAAATCGTTCGACGGGAAAGAATTGTTGGATCCCATAAGATGTGGAACTAATTCTACTTCATTGGCTAAAGATCTGTTCATGTGGAGGGAATATGTTAAGTTCTTCTCACACCCTGAGTTTCATTGCCCCACTAAACCTTCTGGTTTCAGCGTGACAACCTTGGAGTTTACAAAAAGGACAAGAGAAGTTGCAAGAGAATTGATGGGAGGAGTACTAGAGAGCTTAGGTGTGGAGGAGGGCTACATGGACAAGGCATTGCACTTTGACAAGGGCTTACAAATGTTTGCAGCCAACTTGTATCCTATTTGCCCTAATCCAGACCAGGCCATAGGAATTCCTCCTCATACAGACCATGGCTTCTTGACCCTTCTCATCAATAATGGCATCCCTGGCCTTCAAATTTTACATCAAGGCAAATGGGTCAACGTTCAAACCCTTCCCAACTCATACGTGGTTAATGTAGGAGATCAATTAGAGATCGTGAGTAATGGGAAGTACAAGAGCATATATCATAGAGCCTTAGTGAACGAGAAAGTTGCGAGGGTGTCGATCGCTATGGCACACGGACCGGGACTAGATACAGTTGTGGGTGTAGCACCAACATGTGTTGACGATAACAATCCTCCATTGTATAGGGCCGTGACTTACAAAGCGTTTCTAGAAACTCAGCATGGAAGGAAACACAGGACCAAAGCCACTTTGGAAATTTTCCGAGTTGGCTATGAAGATAATTAA 1080 45.19 MAPTATQVTHEPSVGSVEKLYESSTSFTVPSVFTPAAESLSEAISKVLESSIPVFDMTLLTTGDPEQRSEAIEQLGKYCQEWGFFLVINHGVPENMMKETIDVCQGFFVMTEEEKKSFDGKELLDPIRCGTNSTSLAKDLFMWREYVKFFSHPEFHCPTKPSGFSVTTLEFTKRTREVARELMGGVLESLGVEEGYMDKALHFDKGLQMFAANLYPICPNPDQAIGIPPHTDHGFLTLLINNGIPGLQILHQGKWVNVQTLPNSYVVNVGDQLEIVSNGKYKSIYHRALVNEKVARVSIAMAHGPGLDTVVGVAPTCVDDNNPPLYRAVTYKAFLETQHGRKHRTKATLEIFRVGYEDN 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8444126 8446063 + Conep12aG0101500.1 Cone12ag0987 449831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0987 359 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 205 305 IPR005123 -
Cone12ag0987 359 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 44 337 IPR050295 -
Cone12ag0987 359 Gene3D - 12 345 IPR027443 -
Cone12ag0987 359 SUPERFAMILY Clavaminate synthase-like 28 341 - -
Cone12ag0987 359 Pfam non-haem dioxygenase in morphine synthesis N-terminal 52 154 IPR026992 -
Cone12ag0987 359 Pfam 2OG-Fe(II) oxygenase superfamily 208 303 IPR044861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0987 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0987 Cone-Chr12:8444126 Cone18ag0977 Cone-Chr18:7203829 1.94E-67 dispersed
Cone12ag0987 Cone-Chr12:8444126 Cone12ag0989 Cone-Chr12:8449064 3.20E-208 proximal
Cone10ag0948 Cone-Chr10:5009895 Cone12ag0987 Cone-Chr12:8444126 1.25E-120 wgd
Cone12ag0987 Cone-Chr12:8444126 Cone8ag1015 Cone-Chr8:9438323 8.30E-233 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g991 . . . . . . . Bma12g00371 . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0987 . . . . . . . . . . . . . . . . . . . . . . Cpe14g00199 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003038 0 2 2 2 1 1 1 1 1 1 1 1 1 1 2 0 1 4 1 1 1 3 2 3 3 2 4 3 1 5 52