Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1005 ATGTTGAAGTTATCGATCGAACGAGTGAAGAATTTGAAGGCTCTGAGGCCTCAGATCGGCGCTTTCAGAAATCGTCGCTTCTCTACGGCAGCGGAGCCATCTTCAGGTGAAAGTAATGCTCCGAGGGTTCCAAATCTTATTGGAGGGAATTTCGTTGATTCTCAGTCAACCGGATTCATTGATGTTATAAACCCAGCAACACAAGAAGTAGTTTCGAAAGTTCCATTGAGTACAAGTGAAGAGTTCAAGGCTGCAGTATCTGCAGCAAAACAGTCCTTTTCATCATGGCGTAATACTCCAGTTACAACACGTCAGCGAATTATGCTCAAGCTCCAAGGGCTGATTCGGCGAGACATAGATAAGCTTGCCCTGAATATTACAACTGAACAAGGAAAAACACTGAAGGATGCACATGGAGATGTGTTCCGAGGGCTAGAGGTTGTGGAACATGCTTGTGGAATGGCAACTCTGCAAATGGGGGAATACGTTTCCAATGTGTCTCATGGAATTGATACCTACAGCATTAGAGAGCCTCTTGGTGTCTGTGCTGGAATTTGTCCTTTCAACTTTCCCGCAATGATTCCATTATGGATGTTCCCTGTTGCTGTTACTTGTGGCAATACCTTTATTCTAAAGCCATCAGAAAAAGATCCAGGGGCCTCCGTAATGCTTGCAGAATTAGCAATGGAGGCTGGGCTGCCAAATGGTGTCCTAAACATTGTTCATGGTACACATGACATAGTGAATGCTATTTGTGATGATGAGGATATAAGAGCTGTGTCATTTGTTGGTTCTAATACTGCGGGAATGCATATATATTCCAGAGCTGCAGCTAAAGGGAAACGTGTTCAGTCCAACATGGGAGCCAAAAATCACGCAATCGTCTTACCTGATGCAAGCATAGATGCAACTTTGAATGCACTAACTGCAGCTGGATTTGGTGCTGCTGGACAAAGATGCATGGCACTCAGTACTGTTGTTTTTGTCGGAGACTCACAGTCATGGGAGAATAAAATTGTGGAACGTGCAAAAGCCCTAAAGGTAAGTGCTGGTACCGAACCAGATGCAGATCTTGGTCCAGTAATCAGCAAACAGGCGAAGGAAAGGATTTGCAGATTGATTCAATCTGGTGTTGAAAATGGAGCCAGGCTGTTGCTTGATGGGAGAAGTATAAAGGTTCCAGGATATGATAATGGAAACTTTGTCGGTCCCACCATCTTATCAGATGTCAGAGACAATATGGAGTGTTACAAAGAAGAGATTTTTGGCCCGGTTCTCCTTTGCATGAAAGCTGACAGCTTAGAAGAGGCTATAAACATTGTCAACAAAAACAAGTACGGCAATGGAGCATCTATATTCACTTCATCAGGGGTAGCTGCAAGGAAGTTCCAGACTGATATCGAGGCTGGTCAGGTCGGGATCAATGTACCTATTCCTGTTCCCTTGCCATTTTTCTCATTTACTGGATCGAAAGCTTCTTTTGCTGGTGATCTCAACTTTTATGGTAAAGCTGGAGTTAATTTCTATACCCAAATAAAAACGGTAACCCAGCAATGGAAGGACTTACCTGGAGGCACTGGAGTCAACCTTGCAATGCCAACTTCACTCAAATCATAG 1617 43.85 MLKLSIERVKNLKALRPQIGAFRNRRFSTAAEPSSGESNAPRVPNLIGGNFVDSQSTGFIDVINPATQEVVSKVPLSTSEEFKAAVSAAKQSFSSWRNTPVTTRQRIMLKLQGLIRRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMATLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFILKPSEKDPGASVMLAELAMEAGLPNGVLNIVHGTHDIVNAICDDEDIRAVSFVGSNTAGMHIYSRAAAKGKRVQSNMGAKNHAIVLPDASIDATLNALTAAGFGAAGQRCMALSTVVFVGDSQSWENKIVERAKALKVSAGTEPDADLGPVISKQAKERICRLIQSGVENGARLLLDGRSIKVPGYDNGNFVGPTILSDVRDNMECYKEEIFGPVLLCMKADSLEEAINIVNKNKYGNGASIFTSSGVAARKFQTDIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFYTQIKTVTQQWKDLPGGTGVNLAMPTSLKS 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8514370 8519696 - Conep12aG0103300.1 Cone12ag1005 449849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1005 538 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 313 324 IPR016160 GO:0016491(InterPro)
Cone12ag1005 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 62 496 IPR016162 GO:0016491(InterPro)
Cone12ag1005 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 288 488 IPR016163 GO:0016620(InterPro)
Cone12ag1005 538 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 47 294 - -
Cone12ag1005 538 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 7 535 IPR010061 GO:0004491(InterPro)|GO:0004491(PANTHER)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Cone12ag1005 538 SUPERFAMILY ALDH-like 41 521 IPR016161 GO:0016491(InterPro)
Cone12ag1005 538 CDD ALDH_F6_MMSDH 43 519 IPR010061 GO:0004491(InterPro)
Cone12ag1005 538 Pfam Aldehyde dehydrogenase family 51 515 IPR015590 GO:0016491(InterPro)
Cone12ag1005 538 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 45 519 IPR010061 GO:0004491(InterPro)
Cone12ag1005 538 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 288 488 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1005 Cone-Chr12:8514370 Cone8ag0655 Cone-Chr8:6514282 1.50E-56 dispersed
Cone12ag1005 Cone-Chr12:8514370 Cone6ag1516 Cone-Chr6:11972388 1.61E-226 wgd
Cone12ag1005 Cone-Chr12:8514370 Cone8ag1033 Cone-Chr8:9552255 0 wgd
Cone12ag1005 Cone-Chr12:8514370 Cone9ag1436 Cone-Chr9:10678811 8.44E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1005 K00140 - vvi:100266351 936.791