Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1011 ATGGAAAATTATTCCTTCAACTCCTCTTCCTACCCAGAATCCGGCGACTCCTCACCTCGCTCTCGCGAAATCGACTTCGACAATCCTCAACCATGGGACGAGCACAGCAACAACAGCTACAAGGTCAAGTTCATGTGCAGCTATGGCGGTAAGATTCAGCCCCGTCCTCACGACAACCAGCTCTCCTACGTCGGCGGCGACACCAAGATCCTCGTTGTAGATCGCTCCATCAAATTCTCCTCGCTCTTGGCTAAACTCTCTTCTATCTCTGACTCTGACGTCACTTTCAAGTACCAGCTCCCCGGTGAAGATCTCGACGCTCTCATTTCCGTTACGAATGATGACGATCTCGACCACATGATGCACGAGTACGATCGCCTCTACCGTGGCTCTGCTAAACCTGCTCGCATGCGTCTCTTTCTTTTTCCAGTAAATTCTACTCCTGGATTTGCTTCTTCCGTCGATGAAGTCCGGTCTGATAGGGAGCGATTCGTCGATGCGTTGAATTCCGGTTCTGCTGATCCAGCTGAGGCAACTAAGCCTTCTACTCCAATTAATAATTTCGATTTCCTATTCGGTTTGGAGAAAGGATCCGTTCCGCCGCCTATGCCGGTGGCTGAACAGAAACTTCACGATACCGTGCCGGAAGCGGTTGCTCCGCCTACTGAGTTCACAACTAGACCTGGACAGGCAGATCGGCACCAAATCGATATGCAGAGGCAGTTACATGAATTACAGAGGCTACAAATCGCTGAACATGAGCAAGCTATGTACAGAAGATCAAGGAGCGACGAAATTAATCAAGTCGGAGGCGGCTACGGCGCAGCTGGAGATTACTACATGCATAAGGTGATGGAGAAATCCCCTGCGGCCACCTCACAGCCGACGATGCCGTCATCGGCAGGATACTGGCCGGAAAATCAGTTTTCTAGCGGAGGTTTTCAGGCCGTTACGACAGACCAACAGCCGATGTACGTGATCTCAGCTTCCGGTACAGTTTACCAGACGCCATCACCACCTCCTCATATGATGCGACCAGTGACCGGACAAACCAGTCAAGGTTACTACGCCGTGCAGGGACGTATGGCCTCTGATGTTTACCGGGACCAGCCGGTTTACAATGTGGTACAGCAACCTCCTCATCAGCAAACTCTTCCGCAACAGCCGCCAAAAGTTTCAGCGGCAGATCCTCCTCTAACGTACACGCAGGTGGCGTACGATAGCACGACCGGAAGGCATGTATACTACACGGCTGGAGGTGGAGCAGTGGCGCCGCCGCCGCAGTATCAGGGTGTTCAGACTAACGTCAGCGGCGAGATAAGACAGCAAGTTGGCGCACCAGTGGCCCAGGATGGTAAATTCGTTCCAAAAGCATCACAAGGTAATTGA 1389 52.12 MENYSFNSSSYPESGDSSPRSREIDFDNPQPWDEHSNNSYKVKFMCSYGGKIQPRPHDNQLSYVGGDTKILVVDRSIKFSSLLAKLSSISDSDVTFKYQLPGEDLDALISVTNDDDLDHMMHEYDRLYRGSAKPARMRLFLFPVNSTPGFASSVDEVRSDRERFVDALNSGSADPAEATKPSTPINNFDFLFGLEKGSVPPPMPVAEQKLHDTVPEAVAPPTEFTTRPGQADRHQIDMQRQLHELQRLQIAEHEQAMYRRSRSDEINQVGGGYGAAGDYYMHKVMEKSPAATSQPTMPSSAGYWPENQFSSGGFQAVTTDQQPMYVISASGTVYQTPSPPPHMMRPVTGQTSQGYYAVQGRMASDVYRDQPVYNVVQQPPHQQTLPQQPPKVSAADPPLTYTQVAYDSTTGRHVYYTAGGGAVAPPPQYQGVQTNVSGEIRQQVGAPVAQDGKFVPKASQGN 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8540219 8542714 - Conep12aG0103900.1 Cone12ag1011 449855

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1011 462 MobiDBLite consensus disorder prediction 1 17 - -
Cone12ag1011 462 PANTHER OS05G0427100 PROTEIN-RELATED 8 366 IPR053198 -
Cone12ag1011 462 SUPERFAMILY CAD & PB1 domains 57 147 - -
Cone12ag1011 462 CDD PB1_UP2 45 142 - -
Cone12ag1011 462 Gene3D - 62 143 - -
Cone12ag1011 462 SMART PB1_new 56 144 IPR000270 GO:0005515(InterPro)
Cone12ag1011 462 MobiDBLite consensus disorder prediction 1 35 - -
Cone12ag1011 462 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 61 144 - -
Cone12ag1011 462 Pfam PB1 domain 57 143 IPR000270 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1011 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1011 Cone-Chr12:8540219 Cone7ag0873 Cone-Chr7:6739394 1.04E-77 dispersed
Cone2ag0800 Cone-Chr2:34015139 Cone12ag1011 Cone-Chr12:8540219 3.86E-09 transposed
Cone10ag1081 Cone-Chr10:7501998 Cone12ag1011 Cone-Chr12:8540219 8.31E-125 wgd
Cone12ag1011 Cone-Chr12:8540219 Cone3ag1068 Cone-Chr3:29353861 2.86E-125 wgd
Cone12ag1011 Cone-Chr12:8540219 Cone4ag1278 Cone-Chr4:10507725 4.74E-86 wgd
Cone12ag1011 Cone-Chr12:8540219 Cone8ag1038 Cone-Chr8:9577075 9.02E-289 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g642 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1011 Cone8ag1038 Cone3ag1068 Cone10ag1081 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007434 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 0 36