Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1012 ATGGGAAAGAAACGAGTCATGGTGCCGGCGGAGGAGGTTGACTTATACGAGCAGGAGGCAGTCCATGCTCCACATTTGACTGGGCTTACATTCAAGATTTTCACTAGAATACTCGAAGCGCCTGTTGTAGGTTCTTTGATTGTCTCATCGTTGAAGAAGCAGAATAATATGGTTGAGAAAACTGCGATACCGGATGCGCCAATGTTCAAGCCTGAATTTCCACCTCTAGATGAAGATGATAAGCCTGAGGAACGTGTAAGGCAAGCATTAAAGTGTATTCCAGATTATGACCCTACTTACTGGGTATGGCTCTCCATCATTCCGGTCGCAGGACAAATAATATCAATCATAGAGGATTTCAATCACAAAAAACCAACCCAGCCACTGTTGGCTTCTTTTGATGCTGATGATGTCAGGAAACAAGCTGCAGCCTCTACTCAGAGGTTTGAGGAAGGGGTGATAGAAATCAACTGTCGATCTTGGATGGAATATTCGTTGCAATCAAAGATGATATTGACTGCCTTCCTCATCCATCTAAAGGTGCCCTACGTGGATGCAAGAGGTTCGCACAGCGACAAAAGATTCAGCTTGTGCTTCGAAATTGCGTACCTGTGGTGTGATCTTTATAGGGAAGGCAAACATGCACGAGTTAGGGATGGGAAGAATGGTAGGCCGTCTTTTGGAAAATGGAGAGTAGAAATCCCCATGCATCTGAAAGGTATACTGGCGGGTCTTCTTCAGGTCCGGCAGCACTGGTTGCTTCCGGAATATGTTCTGCTGCCCTTGGAACCGATGGTGGAGGTTGGAAAACACTCTGTTCAGTTGGATGCTCTTTTCTACCTATCTTTTCTCCACTATCTAAATTTAATGTACAAAGGCAGTTCACTGTGTGGAGGAACTGTGGAAATAATCGGACCAATTGCATCTTCAGTGGAGGATATCATGCTAGTGTATGCAGCAATATTGGGCAGTTCTCCCGAGGATAGAATCAGTTTGAATCCGGCTCGACCTTGCATGCCAAGCTTGTCATCACGTGACAGTTTGGATGTTCTTGGTTCAATTATAATGGGCAAATATACACCGAGTGAGGAAGTTCTTGAATTGCTATCAAAGACCCATGGCTCCAAAGTTGAAGAGGTGGTTATACCACAGCTGAATGAGATGCGTGCTGCTCACGTTGTTACCATTGGTACAGAAATGCTGTCTTCCATAAATGCTGATTTTGAAGATGGGAAAAGTAAAAGGTTGACATGTGACACTCGTACCAGTATGGCACTATTCCGCTCATTTACTGCAACAGACTCTATTGCTGCCCAACGTCTTAGGCGAAGAATAATGTACCATCACATGGAGGTTTTCAAAAAGGTTGATGTCATAGTGACCCCAACAACAGGTTATGTTCCTGTTATTACTCAAGTCTTTGTTCCTAATAAAGAAGTGACTTCTCATATCCTTTTCTCCATAACAGCACCGCTAATACCTCCTAGTGCTCATAAATATGGGGAGAACGATACGCAGGTTACAGCTTATCTTATGCAGTTCGTTATTGCCGGTAATCTTCTTGGACTCCCTGCCATTTCGGTCCCAATCAGTTATGACAAACAGGGACTTCCAACAGGCATTCAACTAATCGGTCGCCCATGGGGTGAAGCTACAATTCTCTGA 1665 44.32 MGKKRVMVPAEEVDLYEQEAVHAPHLTGLTFKIFTRILEAPVVGSLIVSSLKKQNNMVEKTAIPDAPMFKPEFPPLDEDDKPEERVRQALKCIPDYDPTYWVWLSIIPVAGQIISIIEDFNHKKPTQPLLASFDADDVRKQAAASTQRFEEGVIEINCRSWMEYSLQSKMILTAFLIHLKVPYVDARGSHSDKRFSLCFEIAYLWCDLYREGKHARVRDGKNGRPSFGKWRVEIPMHLKGILAGLLQVRQHWLLPEYVLLPLEPMVEVGKHSVQLDALFYLSFLHYLNLMYKGSSLCGGTVEIIGPIASSVEDIMLVYAAILGSSPEDRISLNPARPCMPSLSSRDSLDVLGSIIMGKYTPSEEVLELLSKTHGSKVEEVVIPQLNEMRAAHVVTIGTEMLSSINADFEDGKSKRLTCDTRTSMALFRSFTATDSIAAQRLRRRIMYHHMEVFKKVDVIVTPTTGYVPVITQVFVPNKEVTSHILFSITAPLIPPSAHKYGENDTQVTAYLMQFVIAGNLLGLPAISVPISYDKQGLPTGIQLIGRPWGEATIL 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8543405 8548423 + Conep12aG0104000.1 Cone12ag1012 449856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1012 554 PANTHER TRANSAMIDASE 298 554 IPR000120 GO:0003824(InterPro)|GO:0016020(PANTHER)|GO:0047412(PANTHER)|GO:0070291(PANTHER)
Cone12ag1012 554 Gene3D Amidase signature (AS) domain 289 554 IPR036928 -
Cone12ag1012 554 Pfam Amidase 301 474 IPR023631 -
Cone12ag1012 554 Pfam Amidase 488 554 IPR023631 -
Cone12ag1012 554 SUPERFAMILY Amidase signature (AS) enzymes 301 554 IPR036928 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1012 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0004 Cone-Chr12:67011 Cone12ag1012 Cone-Chr12:8543405 7.21E-47 dispersed
Cone12ag1012 Cone-Chr12:8543405 Cone8ag1039 Cone-Chr8:9581967 8.59E-208 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g870 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1012 Cone8ag1039 . . . Csa07g00640 . Cme01g00163 . . . . . . . . . . . . . . . . . . . . . . . . Cla09g01610 Cam09g1540 Cec09g1773 Cco09g1857 . . Cre01g0787 . . Chy01g00171 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007433 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 4 1 1 1 2 1 35