Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1013 ATGGAGATTGGGACGGGTACAAGCTTATACCCGCTGCATCGATGCAAAACTGTTCATCTGGTGAGGCATGCTCAAGGGATCCACAATGTAGAGGGTGAAAAGAACTACAAATGCTACATGTCTCCTGAATATTTCGATGCTCATCTGACTCCTCTTGGCTGGCAGCAGGTTGATAATTTGCGCAAGCATGTTTATTCTTCTGGTCTCTCAAAGAGTATTGATTTAGTCATAACTTCTCCTCTGACCAGGACTCTTCAAACAGCCGTTGGAGTATTTGGTGGCGAAGGATACACGGATAAGATGGATGTAGTTCCACTAATGGTAGCAAATGCCGCAAACAGTCATCGTGGAGCTATTTCCAGTCTAAACTGCCCACCTATCCTTGCCGTAGAACTTTGTCGAGAACATCTAGGAGTACATCCTTGTGATCAGAGGAGAAGTGTTAGCGAATATCAGTTTCTTTTCCCTGCTGTTGATTTTTCACTGATTGAAAATGATGAGGACGTATTATGGAAGCCCGATGTTAGAGAGACGAAAGAGGAAGTGGCTGCTCGGGGATTGGAGTTCATGAACTGGTTGTGGACTCGGAAGGAGAAGGAAATAGCAATTGTAACCCACAGTGGATTCTTGTCTCATACGCTACGCTCGTTTGGAAATGACTGTCACCTTTCTGTGAAGAAGGAAATATGCAAACGCTTTGCGAACTGTGAGCTTCGCTCGATGGCGATCGTCGATAAAAGTATGATAGGATCGGATTCCTCCATAACTAACTATCCGGGAAAGATTCCTTCTGGGCCGGACCTACCTAGTGATGACAAAGAAGAAACGGGCATCAAAAAAGAGCTTCCAAATTCTGGATTTCAGAACTAA 870 44.6 MEIGTGTSLYPLHRCKTVHLVRHAQGIHNVEGEKNYKCYMSPEYFDAHLTPLGWQQVDNLRKHVYSSGLSKSIDLVITSPLTRTLQTAVGVFGGEGYTDKMDVVPLMVANAANSHRGAISSLNCPPILAVELCREHLGVHPCDQRRSVSEYQFLFPAVDFSLIENDEDVLWKPDVRETKEEVAARGLEFMNWLWTRKEKEIAIVTHSGFLSHTLRSFGNDCHLSVKKEICKRFANCELRSMAIVDKSMIGSDSSITNYPGKIPSGPDLPSDDKEETGIKKELPNSGFQN 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8548500 8551816 - Conep12aG0104100.1 Cone12ag1013 449857

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1013 289 Pfam Histidine phosphatase superfamily (branch 1) 18 91 IPR013078 -
Cone12ag1013 289 CDD HP_PGM_like 17 88 IPR013078 -
Cone12ag1013 289 Gene3D - 12 259 IPR029033 -
Cone12ag1013 289 MobiDBLite consensus disorder prediction 255 289 - -
Cone12ag1013 289 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 11 243 IPR050275 GO:0005737(PANTHER)|GO:0016791(PANTHER)
Cone12ag1013 289 FunFam Phosphoglycerate mutase-like protein 1 12 259 - -
Cone12ag1013 289 SUPERFAMILY Phosphoglycerate mutase-like 16 245 IPR029033 -
Cone12ag1013 289 SMART PGAM_5 17 213 IPR013078 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1013 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1013 Cone-Chr12:8548500 Cone7ag0874 Cone-Chr7:6753274 8.87E-150 dispersed
Cone12ag1013 Cone-Chr12:8548500 Cone4ag1277 Cone-Chr4:10502271 1.48E-149 wgd
Cone12ag1013 Cone-Chr12:8548500 Cone8ag1040 Cone-Chr8:9587058 9.12E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g871 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00934 . . Cco10g0952 Clacu10g0980 Cmu10g1765 Cre10g1138 Cone12ag1013 Cone8ag1040 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g02229
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000410 2 5 1 2 2 0 4 4 2 4 2 4 4 4 4 4 4 4 3 4 4 3 3 3 3 2 5 16 9 2 113