Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1016 ATGGCTTCGTCGGAGATCGAGGTTGCTGCATCGTCGGAATCAAGAACTCCGGAAACTGAAGTAGTTGCTCCGTTCGACGTGTTCTCGGCCTCCGCCTATGGCGATTTCGAAAAATTAAGGAGTTTCGTCGAAGAAGACGGCGTTTCCCTCTCTGATCCCGACGGAAATGGATATTACGCTCTGCAGTGGGCTGCTCTTAACAACTTCCCTGATATTGTCGAGTACATTATCGAGCATGGAGGGGAAGTCAATGCCGTCGACAGGGTGGAGCAGACAGCGCTGCATTGGGCAGCTGTTCGAGGTTCAATATCAGTGGCTGATGTGCTTTTGCGGAACGGAGCCAGAGTTGAGGCGGTTGATGCAAATGGGTACCGGGCTGTTCATGTTGCTGCTCAGTATGGACAGACTGCTTTCTTAAATCACATTATTTCCAGATATCATGCTGATTTTGAGGTTCCTGACAATGGGGGCCGGAGTCCTCTTCATTGGGCTGCATATAAAGGATTTGCTGATACGGTTAGACTACTTTTATTTAGAGATGCAAGCCAAGGGAGACAGGATAAAGAAGGTTGTACCCCTCTGCACTGGGCTGCAATAAGAGGCAACGTGGAAGTATGTACTGTACTTATGCATGCTGGTACAAAGCAGGAACTATCAGTGAAAGATAATGCTGGGTTTACTCCTATTCAGCTTGCATCTGATAAAGGTCATCGGCGTATCGCTCTTTTCCTCTCAAATGCACAGCGGGCACATAGCAATCAGTGGAGAGAAAAACTGGGTTTGGGAAAAGTGATGGAAAAGGGTTATGCTCCTATTCTATTTGGTACTGTTATCACTCTCATGGTCATCTTCTTCAACTCAGTTCTTGCTGGTCCTAATCTTCCAAAGGTTACTGCTACCGTTGGACTTTGGGGATGGTTTGCTCTATCTCTGGCTGTTGGTGCACTCGGAATGTTCTACAGGTGTAGCAGTAAAGATCCAGGCTACTTAAAAAGACCAGGAGAGTTGGGTGATCATAAGGATTCAGAGGACCTTTTGTTGAATATTGATTTGAACAACTCCTCAGTGTGGACTGGAAATTGGTCTCAACTTTGCCCAACATGCAAGATAATTAGACCTGTCCGGTCTAAGCACTGTCCTACTTGTAATCGATGTGTGGAGCAGTTTGATCATCACTGCCCATGGATATCTAATTGTGTGGGGAAGAGGAACAAAAGGGACTTCTTTATTTTTGTCTGTATGGGAACTTTGACATCATTAGTTGGTGGCGCCATCGCAATCCAAAGGATTTGGATATCATACCCCGTCTTGCCGTCTGGAGAAACATGGATTCATCTTTTGGCAGTTCAACATCCGGGCATCGTTGCATTTTTGGCTGTGGATGCAATTATTTTTCTTGCTGCCTTCACTTTGACCATAGCTCAAGCATCACAGATAGCTCGAAATATCACCACAAATGAAATGGCAAATGCTCTACGGTATAATTATCTTCGCGGTCCGGACGGGAAGTTTCGTAATCCGTATAACCATGGTTGCAGAAAGAATTGTTCGGATTTCTTCATTCATGGCTTCACAGATGATGATGCTTGGCTTCCATTGCACAGAGCTTCCGGTTAG 1617 45.76 MASSEIEVAASSESRTPETEVVAPFDVFSASAYGDFEKLRSFVEEDGVSLSDPDGNGYYALQWAALNNFPDIVEYIIEHGGEVNAVDRVEQTALHWAAVRGSISVADVLLRNGARVEAVDANGYRAVHVAAQYGQTAFLNHIISRYHADFEVPDNGGRSPLHWAAYKGFADTVRLLLFRDASQGRQDKEGCTPLHWAAIRGNVEVCTVLMHAGTKQELSVKDNAGFTPIQLASDKGHRRIALFLSNAQRAHSNQWREKLGLGKVMEKGYAPILFGTVITLMVIFFNSVLAGPNLPKVTATVGLWGWFALSLAVGALGMFYRCSSKDPGYLKRPGELGDHKDSEDLLLNIDLNNSSVWTGNWSQLCPTCKIIRPVRSKHCPTCNRCVEQFDHHCPWISNCVGKRNKRDFFIFVCMGTLTSLVGGAIAIQRIWISYPVLPSGETWIHLLAVQHPGIVAFLAVDAIIFLAAFTLTIAQASQIARNITTNEMANALRYNYLRGPDGKFRNPYNHGCRKNCSDFFIHGFTDDDAWLPLHRASG 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8562913 8566971 + Conep12aG0104400.1 Cone12ag1016 449860

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1016 538 ProSiteProfiles Ankyrin repeat profile. 89 121 IPR002110 GO:0005515(InterPro)
Cone12ag1016 538 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 24 523 - GO:0000139(PANTHER)|GO:0016409(PANTHER)|GO:0018345(PANTHER)
Cone12ag1016 538 Gene3D - 156 250 IPR036770 -
Cone12ag1016 538 Pfam DHHC palmitoyltransferase 362 490 IPR001594 GO:0016409(InterPro)
Cone12ag1016 538 ProSiteProfiles Ankyrin repeat profile. 189 221 IPR002110 GO:0005515(InterPro)
Cone12ag1016 538 Pfam Ankyrin repeats (3 copies) 184 246 IPR002110 GO:0005515(InterPro)
Cone12ag1016 538 Pfam Ankyrin repeats (3 copies) 30 119 IPR002110 GO:0005515(InterPro)
Cone12ag1016 538 ProSiteProfiles Ankyrin repeat region circular profile. 156 182 - -
Cone12ag1016 538 ProSiteProfiles DHHC domain profile. 363 413 - -
Cone12ag1016 538 ProSiteProfiles Ankyrin repeat region circular profile. 89 120 - -
Cone12ag1016 538 FunFam S-acyltransferase 11 142 - -
Cone12ag1016 538 Gene3D - 25 155 IPR036770 -
Cone12ag1016 538 Pfam Ankyrin repeat 157 183 IPR002110 GO:0005515(InterPro)
Cone12ag1016 538 ProSiteProfiles Ankyrin repeat region circular profile. 56 88 - -
Cone12ag1016 538 SMART ANK_2a 122 152 IPR002110 GO:0005515(InterPro)
Cone12ag1016 538 SMART ANK_2a 156 185 IPR002110 GO:0005515(InterPro)
Cone12ag1016 538 SMART ANK_2a 89 118 IPR002110 GO:0005515(InterPro)
Cone12ag1016 538 SMART ANK_2a 56 85 IPR002110 GO:0005515(InterPro)
Cone12ag1016 538 SMART ANK_2a 224 253 IPR002110 GO:0005515(InterPro)
Cone12ag1016 538 SMART ANK_2a 189 218 IPR002110 GO:0005515(InterPro)
Cone12ag1016 538 ProSiteProfiles Ankyrin repeat profile. 156 188 IPR002110 GO:0005515(InterPro)
Cone12ag1016 538 SUPERFAMILY Ankyrin repeat 29 246 IPR036770 -
Cone12ag1016 538 ProSiteProfiles Ankyrin repeat region circular profile. 189 213 - -
Cone12ag1016 538 FunFam S-acyltransferase 143 251 - -
Cone12ag1016 538 ProSiteProfiles Ankyrin repeat profile. 56 88 IPR002110 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1016 K20032 - - mdm:103454161 837.025
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0639 Cone-Chr4:2998153 Cone12ag1016 Cone-Chr12:8562913 1.98E-101 transposed
Cone12ag1016 Cone-Chr12:8562913 Cone8ag1045 Cone-Chr8:9602508 3.68E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g828 . . . . . . . . Cmo19g00523 . . . . . . . Cpe15g00405 Bhi05g00980 Tan02g1093 . Lac12g0121 . . . Cla02g00732 Cam02g0777 Cec02g0776 Cco02g0805 Clacu02g0772 Cmu02g0765 Cre02g1079 Cone12ag1016 Cone8ag1045 . . Lsi03g00647 . . . . . . . . . . . . . . . Cma19g00510 . Car19g00384 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006934 1 4 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 3 1 37