Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1024 ATGACCATCATGATTACATTGAACAATATTACCCCATCGCTCATTTACGCTATAGTACTATCCCTAGCCCTAGTACTTCTTCACCCACATCCATCTAATGCTCAAGACAACCCACGAGACTACCTAGACGCCCACAATACGGCTCGAGCCAAAGTCGGTGTGAGCCCACTTGTTTGGGACAACCGGTTAGTTTCATACGCACAAAACTATGCCAATCAGCGAATCAATGACTGCCGGCTGGTGCACTCAGGTGGACCCTATGGGGAGAACATCGCTGGGAGCACTGGTGACTTGTCAGGCAAAGCTGCCGTGAAGTTGTTTGTGGATGAGAAGGCTCACTATGATTATAACTCTAACTCATGCGTTGGAGGGCAGTGCTTGCACTACACTCAAGTGGTTTGGCGTAATTCGGCTCGGCTTGGGTGCGCGAAGGTGCGGTGTAGTAATGGCGGGACGTTTATCGGGTGCAACTATGATCCTCGGGGGAATATAGTTGGCCAGAAGCCTTATTGA 513 49.9 MTIMITLNNITPSLIYAIVLSLALVLLHPHPSNAQDNPRDYLDAHNTARAKVGVSPLVWDNRLVSYAQNYANQRINDCRLVHSGGPYGENIAGSTGDLSGKAAVKLFVDEKAHYDYNSNSCVGGQCLHYTQVVWRNSARLGCAKVRCSNGGTFIGCNYDPRGNIVGQKPY 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8597656 8598287 - Conep12aG0105300.1 Cone12ag1024 449868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1024 170 PRINTS Allergen V5/Tpx-1 family signature 103 116 IPR001283 -
Cone12ag1024 170 PRINTS Allergen V5/Tpx-1 family signature 153 166 IPR001283 -
Cone12ag1024 170 PRINTS Allergen V5/Tpx-1 family signature 57 75 IPR001283 -
Cone12ag1024 170 PRINTS Allergen V5/Tpx-1 family signature 126 142 IPR001283 -
Cone12ag1024 170 FunFam Putative pathogenesis-related protein 1 35 170 - -
Cone12ag1024 170 SUPERFAMILY PR-1-like 30 170 IPR035940 -
Cone12ag1024 170 ProSitePatterns CRISP family signature 2. 153 164 IPR018244 GO:0005576(InterPro)
Cone12ag1024 170 CDD CAP_PR-1 38 170 - -
Cone12ag1024 170 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 39 166 IPR001283 GO:0005615(PANTHER)
Cone12ag1024 170 Pfam Cysteine-rich secretory protein family 42 158 IPR014044 -
Cone12ag1024 170 Gene3D CAP 36 170 IPR035940 -
Cone12ag1024 170 SMART SCP_3 36 166 IPR014044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1024 K13449 - - rcu:8268876 232.261
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0400 Cone-Chr10:1903491 Cone12ag1024 Cone-Chr12:8597656 6.64E-79 dispersed
Cone12ag1024 Cone-Chr12:8597656 Cone8ag1058 Cone-Chr8:9652880 2.73E-67 dispersed
Cone12ag1022 Cone-Chr12:8592688 Cone12ag1024 Cone-Chr12:8597656 3.03E-61 proximal
Cone12ag1024 Cone-Chr12:8597656 Cone8ag1057 Cone-Chr8:9646801 6.71E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g795 . . Bda06g01147 . Bpe07g00299 . . Bma12g00311 Cmo19g00542 . . . . . . Cpe04g00337 Cpe15g00421 . . . . . . . Cla02g00708 Cam02g0744 Cec02g0756 Cco02g0783 Clacu02g0751 Cmu02g0745 Cre02g1060 Cone12ag1024 Cone8ag1057 . . Lsi03g00624 Csa07g00662 . Cme01g00141 . . . . . . . . . . . . Cma19g00533 . . . . . . . . . . . . . . . . . . . . Chy01g00152 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127