Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1036 ATGTGTCGATCAGGCAATGCCAGCAAGAGCTGCTCGGGATCGGTAGTGATCGTGTTAATGATACTTGTTCTGTTTTCCGCCGTCGCTAACTCATCTAATGACTCCTTCATTATTGAGTCCGTTCCTGGATACCCCGGAAAGCTTCCTTTCAAATTTGAAACCGGATATATAGGGGTAGGAGATACGGATGAAGTACAGTTCTTTTATTACTTTGTGGAGACGGAGAGAGATCCAGTTCAGGATCCGCTTGTGCTTTGGCTTACTGGAGGGCCTGGTTGTTCTGGCTTTTCTGCTCTTGCTTACGAAATTGGTCCATTGACATTCGATGTTACAACTTTCGACGGGACCATGCCATCTGTGATATTGAACCCATATTCATGGACCAAGGTTGCTAGTATAATATTCATTGATGCACCTGTTGGAGCTGGATTCTCATACTCAACCACCCCAGAAGGTTACTACACCTCAGACGCCAAATCAGCTGCTCAGACCTATACTTTCTTCAGAAAATGGCTTCTCAATCATCCACAATATCTTGGGAATCAAATCTACGTCGGCGGGGATTCGTACTCCGGAATCATTGTTCCGATTCTTGTCGAAAACATTCTAGAAGGATTGAAAGCAGGGCTAAGGCCTCACATTGATCTTCAAGGATACTTGCTGGGAAATCCAGTTACAGATAATTTCATTGACGAAAATGCAAGAGTCCCATACGTCCATAGGGTCAACCTCATTTCTGATGAACAATACGAGGCGGCAAAATACTACTGCAAAGGAGACTACATTAACTTCGACTATAACAACACTCTCTGCGTAACGGCTCTTCTTACGATCAAACAGAACGTTTTGCAAATAAATCTTGCTCAAATTTTGGAACCTCAATGCGCTTTTTCATCTGGAAAGCCGAAGCTATCGGCATGGGACTTGAAAGCTCAGGACCCGGATCAGTCTCTGGACGAGATGCTGTCTATGCGAACTCCACTTCCAGAATTGCTGTGCCGGGGTCTTACTTATGTGCTCTCCTACAAGTGGTTGAATGATGATAATGTTCGTCGAGCCCTTCATGTTCGACCTGGAACTGTATCGAGTTGGAAGAGGTGTCCACGATCATTGGCGGACTTCACCGAAGAAGTTACAAGTACTATCGCGTATCATAAGAATTTCACAAGCACCGGCCTTAGAGCTCTCGTTTACAGTGGAGACCATGATATCTCTGTTCCATGGATTGCTACTTATAAATGGATCAAGGAACTTAATGTTTCGGTTTTCGATCAATGGAGACCGTGGTATGTTGACGGACAAGTTGCCGGGTACCAAGTGAAGTTCATGAATGACAACTACAGGTTGACATACGTGACCTTGAAGGGTGCGGGCCACACGGCTCCGGAGTACAAGCACAAGGAGAGTCTTGCCATGGTCGATAGATTTTTTGCCCGTTACCCTATTTAA 1449 45.07 MCRSGNASKSCSGSVVIVLMILVLFSAVANSSNDSFIIESVPGYPGKLPFKFETGYIGVGDTDEVQFFYYFVETERDPVQDPLVLWLTGGPGCSGFSALAYEIGPLTFDVTTFDGTMPSVILNPYSWTKVASIIFIDAPVGAGFSYSTTPEGYYTSDAKSAAQTYTFFRKWLLNHPQYLGNQIYVGGDSYSGIIVPILVENILEGLKAGLRPHIDLQGYLLGNPVTDNFIDENARVPYVHRVNLISDEQYEAAKYYCKGDYINFDYNNTLCVTALLTIKQNVLQINLAQILEPQCAFSSGKPKLSAWDLKAQDPDQSLDEMLSMRTPLPELLCRGLTYVLSYKWLNDDNVRRALHVRPGTVSSWKRCPRSLADFTEEVTSTIAYHKNFTSTGLRALVYSGDHDISVPWIATYKWIKELNVSVFDQWRPWYVDGQVAGYQVKFMNDNYRLTYVTLKGAGHTAPEYKHKESLAMVDRFFARYPI 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8661014 8664634 - Conep12aG0106500.1 Cone12ag1036 449880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1036 482 FunFam Serine carboxypeptidase-like 19 31 301 - -
Cone12ag1036 482 FunFam Carboxypeptidase 333 482 - -
Cone12ag1036 482 Gene3D alpha/beta hydrolase 30 303 IPR029058 -
Cone12ag1036 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 171 196 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone12ag1036 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 449 462 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone12ag1036 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 135 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone12ag1036 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 136 146 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone12ag1036 482 Pfam Serine carboxypeptidase 42 478 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone12ag1036 482 Gene3D - 336 481 - -
Cone12ag1036 482 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 476 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Cone12ag1036 482 SUPERFAMILY alpha/beta-Hydrolases 38 481 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1036 K16296 - - vvi:100253211 661.373
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1036 Cone-Chr12:8661014 Cone8ag1068 Cone-Chr8:9696866 0 dispersed
Cone12ag1036 Cone-Chr12:8661014 Cone12ag1038 Cone-Chr12:8672114 2.01E-116 proximal
Cone12ag1036 Cone-Chr12:8661014 Cone12ag1039 Cone-Chr12:8680342 6.70E-46 proximal
Cone12ag1035 Cone-Chr12:8656140 Cone12ag1036 Cone-Chr12:8661014 6.00E-152 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g744 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1036 Cone8ag1067 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000253 3 8 1 3 3 5 0 5 5 2 3 6 2 7 6 4 6 13 2 6 4 6 3 7 8 9 2 5 4 14 152