Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1042 ATGGGTGCTCCGAAGCAAAAATGGACATCAGAAGAAGAAGATGCACTAAAAGCCGGTGTTGAAAAGCATGGTGCCGGAAAATGGCGCACCATTCTAAAAGACCCTGAATTCAGCTCCATCTTGTACATGCGTTCAAATGTAGATCTCAAGGATAAATGGAGAAATATGTGTGCTATGACGAATGGGTATGGCTCCAGAGATAAATCTAGATCATCATCACATAAGAAACAGTATGCACCCATTCAAGATGATAGCCCTTCTAGACTGAGCAATTCTGTTCGAAGTGATGAAGAAGCGATTGATGCAAAGTTCCTTGATGATACTATGCAGGTTTCTGGCCCGAAGAGATCTATAGTAAGGGTTGACAATCTTATAATAGAGGCAATTAGTACCTTGGATGAGCATGGTGGTTCTGATAAAACAACTATTGCTTCATTTATACAGGAACAGTTTTGGGCTCCTCCGGATTTTAAGCAGATATTATCGGCTAAATTGAAGTATATGACAGCTAGTGGTAAACTGATTAAGGTTAAGCGCAGATACCGGATTGCTCTGGCCCGAAAAAGAAAGTCCTCTCTTGTATTATTAGAGGGGGGTAAGCATAGGGTTTCTCCTAAAATGGAGAAGGACTACTACACGAGTACTGTTCCAAAGGGTCGGATGGATTTCGAGTTGGCTACGAAGGGAAAGATGAGTTATGAAGAGGCTGCTTTGGCTGCTGCTCGAGCTGTTGCAGAGGCAGAAGCGGCCATTGCAGAAGCTGAAGAAGCAGCAAGGGAGGCTGAGGCAGCTGAAGCTGATGCTGAAGAAGCTCGTGCTTTTGCATTGGCTGCTTCCAAAACCTTGAAAGAAAGAAGCGTCCCTGTCCCTAAAATGATAGCTGTGTGGGCCGAATGTCTTGTGGGCTGTGAGCAACGCAACTTAGGTTTTCTGGTTTCAATCATGGATAGCGAGTCACTGATGGCTCGCATCCAGCAGGTGGAACACGAGCGGGACGAGCTGAGAAAAGATATTGAGCAATTATGTATGCAGCAAGCTGGACGTAGCTACCTTGTTGTTGCCACTGGGATGCATTTTCAAAGGACAGCTGCCTTCGAGCAGGAGATTGAGAGCTTGAAAAAGAAGTTGTCTACTTGCACCAGAGATAACCATAATCTTCAAGAAGAGCTTTCAGAAGCCTACAGAGTAAAGAGTCAGCTGGCGGATCTTCATGGTGTTGAAGTTGCAAAGAATATGGAAGCAGAGAAGCAGCTTAAATTTTTCCAAGGCTGCGTAGCTTCTGCTTTTTCTGAACGGGATCATTTTATTATGAAGGCTGAGAAGGCCAAGGAGAATGAAGGACTCATGGCTCAAAAGTTCAATGGGTTCCAGAACAGGTTAGAAGGGCTCACCACTAACTGTCGTGGGATTGAGGAACTTAATTCTACACTAAGAATTAAGTTAGCAAAGCAGGAAGAGGACAATGAAATTTCAAGAAGAGTATTTGTTTTTGGCCTTCTTGGATTGGAAATTGAAAGTCATCTAAAGAAGAGAGTTAGTGAGTTGGAAAAGAAGATAATCCTTATGGACGGATTGGTCAAGAGCAAGGTAGCAGGGTTATATCAGTACCATTCCCAGCATCAAGTTCATGTGGTAAAATTACTAGACGAAGGAAAATCTCATTTAAACTCGATTATTAAAGAGATAGAAGAAAAGATTAAGCATTTTGATGGGAGAAATATGCAAGATTCAGGGGCTTCTCGGAGAGATCAAAAACCAGAAGAATATGATTTTCAAGATGTACATGTAAGTACTGCAACTAAGAGGAATATTACTGTCTTACAAGAAATGCTGGATGATAGAATGAGTGATGCATCAGAAACTTTTGCTCAAGCGATGCAAGAGAAGGTCCTTGATTTGTTGCAGCACTCTTGCTTCTCTCACAGCAGGAAGGGAGGTATTTTACTTGAAAGAAATGACAATGCGGCTCAGAGGAAAACGGAGGAGCTCCAGCGAAACTTACTTCAGGTTACGAATGAAAAGGTCAAAGCACTCGTGGAGTTGGCTCAGTTAAAGCAGGAATATCACCTTCTTAAAGAGAAAATTGGTCAAGACGTTGAGGGAAAGAAACTCATTCTTCGTGAGGATGGAAAACTAAGAAACTTGCTCAAGAAAACATATCTGAAACGTTGGATCGGTGCACTAGATCTTGGTGGAAAGGAAACTAAATTTCACAGAGATAATGATGAAGATAATTACTCTGGCGGGAGGTCCAGTAGTATGGATTTTGCCAGTACGAGGGTTGAAAATGCGACTCCAAAGGAGAGTAATGAATGGGCAAAATCCAAGATGAGTGGCACATTAGAAGCCCTTGAAGAGATTATAAACAAGGCGAAACTAATCATGACTGCCCTCGGCAGCTCTCTACCTATAAGTCGGTCAGCCGAGGCAGATATTGATTCGTCAATTGGTGAACCTCTTGGCGAAGAAGACTCAAGCAGTGAGAAAATTGATCCAGTTTCTGCTGCCGGGTTTGAAATGGTGGATCTCCTGATACTTGCAGCTCAGATATTGAAAAGCAGCATCAGTGAAGACGACTCTTGA 2583 42.78 MGAPKQKWTSEEEDALKAGVEKHGAGKWRTILKDPEFSSILYMRSNVDLKDKWRNMCAMTNGYGSRDKSRSSSHKKQYAPIQDDSPSRLSNSVRSDEEAIDAKFLDDTMQVSGPKRSIVRVDNLIIEAISTLDEHGGSDKTTIASFIQEQFWAPPDFKQILSAKLKYMTASGKLIKVKRRYRIALARKRKSSLVLLEGGKHRVSPKMEKDYYTSTVPKGRMDFELATKGKMSYEEAALAAARAVAEAEAAIAEAEEAAREAEAAEADAEEARAFALAASKTLKERSVPVPKMIAVWAECLVGCEQRNLGFLVSIMDSESLMARIQQVEHERDELRKDIEQLCMQQAGRSYLVVATGMHFQRTAAFEQEIESLKKKLSTCTRDNHNLQEELSEAYRVKSQLADLHGVEVAKNMEAEKQLKFFQGCVASAFSERDHFIMKAEKAKENEGLMAQKFNGFQNRLEGLTTNCRGIEELNSTLRIKLAKQEEDNEISRRVFVFGLLGLEIESHLKKRVSELEKKIILMDGLVKSKVAGLYQYHSQHQVHVVKLLDEGKSHLNSIIKEIEEKIKHFDGRNMQDSGASRRDQKPEEYDFQDVHVSTATKRNITVLQEMLDDRMSDASETFAQAMQEKVLDLLQHSCFSHSRKGGILLERNDNAAQRKTEELQRNLLQVTNEKVKALVELAQLKQEYHLLKEKIGQDVEGKKLILREDGKLRNLLKKTYLKRWIGALDLGGKETKFHRDNDEDNYSGGRSSSMDFASTRVENATPKESNEWAKSKMSGTLEALEEIINKAKLIMTALGSSLPISRSAEADIDSSIGEPLGEEDSSSEKIDPVSAAGFEMVDLLILAAQILKSSISEDDS 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8696262 8702143 + Conep12aG0107100.1 Cone12ag1042 449886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1042 860 SMART sant 4 59 IPR001005 -
Cone12ag1042 860 MobiDBLite consensus disorder prediction 61 93 - -
Cone12ag1042 860 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cone12ag1042 860 CDD SANT_TRF 6 57 - -
Cone12ag1042 860 MobiDBLite consensus disorder prediction 75 89 - -
Cone12ag1042 860 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cone12ag1042 860 FunFam Telomere repeat-binding factor 1 2 58 - -
Cone12ag1042 860 Coils Coil 237 274 - -
Cone12ag1042 860 Coils Coil 369 389 - -
Cone12ag1042 860 PANTHER MYOSIN HEAVY CHAIN-LIKE PROTEIN 775 856 - -
Cone12ag1042 860 SUPERFAMILY Homeodomain-like 2 62 IPR009057 -
Cone12ag1042 860 Coils Coil 653 694 - -
Cone12ag1042 860 Coils Coil 317 344 - -
Cone12ag1042 860 MobiDBLite consensus disorder prediction 1 22 - -
Cone12ag1042 860 Pfam linker histone H1 and H5 family 121 178 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone12ag1042 860 Gene3D - 8 95 - -
Cone12ag1042 860 MobiDBLite consensus disorder prediction 7 22 - -
Cone12ag1042 860 SUPERFAMILY Winged helix DNA-binding domain 115 189 IPR036390 -
Cone12ag1042 860 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Cone12ag1042 860 Gene3D - 115 192 IPR036388 -
Cone12ag1042 860 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 117 185 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone12ag1042 860 SMART h15plus2 115 180 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1042 Cone-Chr12:8696262 Cone8ag0167 Cone-Chr8:853030 3.08E-58 dispersed
Cone12ag1042 Cone-Chr12:8696262 Cone3ag1033 Cone-Chr3:29123410 1.60E-83 wgd
Cone12ag1042 Cone-Chr12:8696262 Cone8ag1074 Cone-Chr8:9726908 2.42E-270 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44495 PF01852 START 1.40E-09 CL0209 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1042 - - - 0.0