Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1042 ATGGGTGCTCCGAAGCAAAAATGGACATCAGAAGAAGAAGATGCACTAAAAGCCGGTGTTGAAAAGCATGGTGCCGGAAAATGGCGCACCATTCTAAAAGACCCTGAATTCAGCTCCATCTTGTACATGCGTTCAAATGTAGATCTCAAGGATAAATGGAGAAATATGTGTGCTATGACGAATGGGTATGGCTCCAGAGATAAATCTAGATCATCATCACATAAGAAACAGTATGCACCCATTCAAGATGATAGCCCTTCTAGACTGAGCAATTCTGTTCGAAGTGATGAAGAAGCGATTGATGCAAAGTTCCTTGATGATACTATGCAGGTTTCTGGCCCGAAGAGATCTATAGTAAGGGTTGACAATCTTATAATAGAGGCAATTAGTACCTTGGATGAGCATGGTGGTTCTGATAAAACAACTATTGCTTCATTTATACAGGAACAGTTTTGGGCTCCTCCGGATTTTAAGCAGATATTATCGGCTAAATTGAAGTATATGACAGCTAGTGGTAAACTGATTAAGGTTAAGCGCAGATACCGGATTGCTCTGGCCCGAAAAAGAAAGTCCTCTCTTGTATTATTAGAGGGGGGTAAGCATAGGGTTTCTCCTAAAATGGAGAAGGACTACTACACGAGTACTGTTCCAAAGGGTCGGATGGATTTCGAGTTGGCTACGAAGGGAAAGATGAGTTATGAAGAGGCTGCTTTGGCTGCTGCTCGAGCTGTTGCAGAGGCAGAAGCGGCCATTGCAGAAGCTGAAGAAGCAGCAAGGGAGGCTGAGGCAGCTGAAGCTGATGCTGAAGAAGCTCGTGCTTTTGCATTGGCTGCTTCCAAAACCTTGAAAGAAAGAAGCGTCCCTGTCCCTAAAATGATAGCTGTGTGGGCCGAATGTCTTGTGGGCTGTGAGCAACGCAACTTAGGTTTTCTGGTTTCAATCATGGATAGCGAGTCACTGATGGCTCGCATCCAGCAGGTGGAACACGAGCGGGACGAGCTGAGAAAAGATATTGAGCAATTATGTATGCAGCAAGCTGGACGTAGCTACCTTGTTGTTGCCACTGGGATGCATTTTCAAAGGACAGCTGCCTTCGAGCAGGAGATTGAGAGCTTGAAAAAGAAGTTGTCTACTTGCACCAGAGATAACCATAATCTTCAAGAAGAGCTTTCAGAAGCCTACAGAGTAAAGAGTCAGCTGGCGGATCTTCATGGTGTTGAAGTTGCAAAGAATATGGAAGCAGAGAAGCAGCTTAAATTTTTCCAAGGCTGCGTAGCTTCTGCTTTTTCTGAACGGGATCATTTTATTATGAAGGCTGAGAAGGCCAAGGAGAATGAAGGACTCATGGCTCAAAAGTTCAATGGGTTCCAGAACAGGTTAGAAGGGCTCACCACTAACTGTCGTGGGATTGAGGAACTTAATTCTACACTAAGAATTAAGTTAGCAAAGCAGGAAGAGGACAATGAAATTTCAAGAAGAGTATTTGTTTTTGGCCTTCTTGGATTGGAAATTGAAAGTCATCTAAAGAAGAGAGTTAGTGAGTTGGAAAAGAAGATAATCCTTATGGACGGATTGGTCAAGAGCAAGGTAGCAGGGTTATATCAGTACCATTCCCAGCATCAAGTTCATGTGGTAAAATTACTAGACGAAGGAAAATCTCATTTAAACTCGATTATTAAAGAGATAGAAGAAAAGATTAAGCATTTTGATGGGAGAAATATGCAAGATTCAGGGGCTTCTCGGAGAGATCAAAAACCAGAAGAATATGATTTTCAAGATGTACATGTAAGTACTGCAACTAAGAGGAATATTACTGTCTTACAAGAAATGCTGGATGATAGAATGAGTGATGCATCAGAAACTTTTGCTCAAGCGATGCAAGAGAAGGTCCTTGATTTGTTGCAGCACTCTTGCTTCTCTCACAGCAGGAAGGGAGGTATTTTACTTGAAAGAAATGACAATGCGGCTCAGAGGAAAACGGAGGAGCTCCAGCGAAACTTACTTCAGGTTACGAATGAAAAGGTCAAAGCACTCGTGGAGTTGGCTCAGTTAAAGCAGGAATATCACCTTCTTAAAGAGAAAATTGGTCAAGACGTTGAGGGAAAGAAACTCATTCTTCGTGAGGATGGAAAACTAAGAAACTTGCTCAAGAAAACATATCTGAAACGTTGGATCGGTGCACTAGATCTTGGTGGAAAGGAAACTAAATTTCACAGAGATAATGATGAAGATAATTACTCTGGCGGGAGGTCCAGTAGTATGGATTTTGCCAGTACGAGGGTTGAAAATGCGACTCCAAAGGAGAGTAATGAATGGGCAAAATCCAAGATGAGTGGCACATTAGAAGCCCTTGAAGAGATTATAAACAAGGCGAAACTAATCATGACTGCCCTCGGCAGCTCTCTACCTATAAGTCGGTCAGCCGAGGCAGATATTGATTCGTCAATTGGTGAACCTCTTGGCGAAGAAGACTCAAGCAGTGAGAAAATTGATCCAGTTTCTGCTGCCGGGTTTGAAATGGTGGATCTCCTGATACTTGCAGCTCAGATATTGAAAAGCAGCATCAGTGAAGACGACTCTTGA 2583 42.78 MGAPKQKWTSEEEDALKAGVEKHGAGKWRTILKDPEFSSILYMRSNVDLKDKWRNMCAMTNGYGSRDKSRSSSHKKQYAPIQDDSPSRLSNSVRSDEEAIDAKFLDDTMQVSGPKRSIVRVDNLIIEAISTLDEHGGSDKTTIASFIQEQFWAPPDFKQILSAKLKYMTASGKLIKVKRRYRIALARKRKSSLVLLEGGKHRVSPKMEKDYYTSTVPKGRMDFELATKGKMSYEEAALAAARAVAEAEAAIAEAEEAAREAEAAEADAEEARAFALAASKTLKERSVPVPKMIAVWAECLVGCEQRNLGFLVSIMDSESLMARIQQVEHERDELRKDIEQLCMQQAGRSYLVVATGMHFQRTAAFEQEIESLKKKLSTCTRDNHNLQEELSEAYRVKSQLADLHGVEVAKNMEAEKQLKFFQGCVASAFSERDHFIMKAEKAKENEGLMAQKFNGFQNRLEGLTTNCRGIEELNSTLRIKLAKQEEDNEISRRVFVFGLLGLEIESHLKKRVSELEKKIILMDGLVKSKVAGLYQYHSQHQVHVVKLLDEGKSHLNSIIKEIEEKIKHFDGRNMQDSGASRRDQKPEEYDFQDVHVSTATKRNITVLQEMLDDRMSDASETFAQAMQEKVLDLLQHSCFSHSRKGGILLERNDNAAQRKTEELQRNLLQVTNEKVKALVELAQLKQEYHLLKEKIGQDVEGKKLILREDGKLRNLLKKTYLKRWIGALDLGGKETKFHRDNDEDNYSGGRSSSMDFASTRVENATPKESNEWAKSKMSGTLEALEEIINKAKLIMTALGSSLPISRSAEADIDSSIGEPLGEEDSSSEKIDPVSAAGFEMVDLLILAAQILKSSISEDDS 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8696262 8702143 + Conep12aG0107100.1 Cone12ag1042 449886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1042 860 SMART sant 4 59 IPR001005 -
Cone12ag1042 860 MobiDBLite consensus disorder prediction 61 93 - -
Cone12ag1042 860 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cone12ag1042 860 CDD SANT_TRF 6 57 - -
Cone12ag1042 860 MobiDBLite consensus disorder prediction 75 89 - -
Cone12ag1042 860 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cone12ag1042 860 FunFam Telomere repeat-binding factor 1 2 58 - -
Cone12ag1042 860 Coils Coil 237 274 - -
Cone12ag1042 860 Coils Coil 369 389 - -
Cone12ag1042 860 PANTHER MYOSIN HEAVY CHAIN-LIKE PROTEIN 775 856 - -
Cone12ag1042 860 SUPERFAMILY Homeodomain-like 2 62 IPR009057 -
Cone12ag1042 860 Coils Coil 653 694 - -
Cone12ag1042 860 Coils Coil 317 344 - -
Cone12ag1042 860 MobiDBLite consensus disorder prediction 1 22 - -
Cone12ag1042 860 Pfam linker histone H1 and H5 family 121 178 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone12ag1042 860 Gene3D - 8 95 - -
Cone12ag1042 860 MobiDBLite consensus disorder prediction 7 22 - -
Cone12ag1042 860 SUPERFAMILY Winged helix DNA-binding domain 115 189 IPR036390 -
Cone12ag1042 860 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Cone12ag1042 860 Gene3D - 115 192 IPR036388 -
Cone12ag1042 860 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 117 185 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone12ag1042 860 SMART h15plus2 115 180 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1042 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1042 Cone-Chr12:8696262 Cone8ag0167 Cone-Chr8:853030 3.08E-58 dispersed
Cone12ag1042 Cone-Chr12:8696262 Cone3ag1033 Cone-Chr3:29123410 1.60E-83 wgd
Cone12ag1042 Cone-Chr12:8696262 Cone8ag1074 Cone-Chr8:9726908 2.42E-270 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone3ag1033 . 1 297 Single Myb Histone (SMH) Gene Family AT1G49950 68.0 2.8e-85 312.8
Cone12ag1042 . 1 287 Single Myb Histone (SMH) Gene Family AT1G49950 56.4 2.1e-64 243.4
Cone8ag0167 . 1 248 Single Myb Histone (SMH) Gene Family AT1G49950 52.6 8.1e-61 231.5
Cone12ag0173 . 1 249 Single Myb Histone (SMH) Gene Family AT1G49950 51.0 9.9e-59 224.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004516 1 9 2 1 0 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 2 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44495 PF01852 START 1.40E-09 CL0209 Cone TF