Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1043 ATGGAGACGAAGGAAACCGCAGGCGATACTGCTCGGCCATGGAAATCCTACCACACCGTTTATACTAATGCCAAAGCTGGCATGGAAGGAGTTGACAAGGAGAAAGTTCAGAAAATCGTATATGAAATGAGTAAAGGATCAAAATATTTTCAAAACGAGGAACGCAAGGAGGCTTTTATTAGGCAGAAGATTGACACCATGCAGGCTCGATGCGCAAAGCTCAGTGCATCAGATCTATCTCACTATCGGAAGGTAGCAGATAAAAGAATTTCAGAGCTAGAAGCTACACGTGACCTGTCAAGAACTTGGTTGCACGTAGGTATGGATGCTTTCTATGCAGCCGTTGAAACATTAAGCAATCCTTTGTTAAAAGGAAAGCCAATGGCAGTTGGCGGCATGTCCATGATTTCCACTGCTAATTACGAGGCTCGCAAATTTGGGGTTCGTGTGCTATGCCTGGCTTCATTGCCCGGAAACTCTAGATATGATCCCAACTTCATTGCTGGTAGTTTGGATGAAACATACCTCAACATTACTGATGTCTGTAAAGAAAGGGGCATCCCTAGTGAAGAAGTTTGCTCTGATATAAACAAGCCAAATGGACAGTTCATTTTACCAAACGACCGGACAGCTGTCATCACATTTATATCCTCACTTCCCATAGGAAAGATTGGGGGCATCAGTAAAGTCATGGAACATATATTAAAAGATTCTTTCGGAGTAAATACTTGTGAGGAGATCCTTCAAAAGGGTGATTACCTCTGTGCATTATTCTCTCACAGTTCAGCAGATTTTTTACTTTCTGTGGGACTTGGGCTTGGGAGGACCGACACCCCAGAAACCGAGCTGGGAAAAAGCATTAGTAATGAGAGAATATTTGCAGCCATGGATGATGAGAATCGGTTTAACCAGAAATAG 918 43.03 METKETAGDTARPWKSYHTVYTNAKAGMEGVDKEKVQKIVYEMSKGSKYFQNEERKEAFIRQKIDTMQARCAKLSASDLSHYRKVADKRISELEATRDLSRTWLHVGMDAFYAAVETLSNPLLKGKPMAVGGMSMISTANYEARKFGVRVLCLASLPGNSRYDPNFIAGSLDETYLNITDVCKERGIPSEEVCSDINKPNGQFILPNDRTAVITFISSLPIGKIGGISKVMEHILKDSFGVNTCEEILQKGDYLCALFSHSSADFLLSVGLGLGRTDTPETELGKSISNERIFAAMDDENRFNQK 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8711651 8713877 - Conep12aG0107700.1 Cone12ag1043 449887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1043 305 Gene3D - 111 155 - -
Cone12ag1043 305 ProSiteProfiles UmuC domain profile. 103 149 IPR001126 GO:0006281(InterPro)
Cone12ag1043 305 FunFam DNA polymerase kappa subunit 20 110 - -
Cone12ag1043 305 Pfam impB/mucB/samB family 108 150 IPR001126 GO:0006281(InterPro)
Cone12ag1043 305 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 161 192 IPR050116 GO:0003887(PANTHER)|GO:0005634(PANTHER)|GO:0042276(PANTHER)
Cone12ag1043 305 SUPERFAMILY DNA/RNA polymerases 78 276 IPR043502 -
Cone12ag1043 305 FunFam DNA polymerase kappa 196 277 - -
Cone12ag1043 305 Gene3D - 21 110 - -
Cone12ag1043 305 Gene3D - 177 277 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1043 K03511 - - csv:101212452 452.981
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1043 Cone-Chr12:8711651 Cone8ag1076 Cone-Chr8:9737812 6.01E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g708 . . . . . . . . Cmo19g00564 . . . . . . . Cpe15g00437 . . . . . . . Cla02g00683 Cam02g0717 Cec02g0730 Cco02g0752 Clacu02g0726 Cmu02g0724 Cre02g1036 Cone12ag1043 Cone8ag1076 . . Lsi03g00577 Csa07g00682 . Cme01g00122 . . . . . . . . . . . . Cma19g00550 . Car19g00408 . . . . . . . . . . . . . . . . . . Chy01g00132 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011596 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30