Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1048 ATGGAGCCAATTGGAGATATTTCGGAAGGAGAATGGAGCTCTCTAAGTGGTATGTACACTGCAGAAGAATCTGATTTCATGGCTCGATTACTGAACAGCTGCCCTTCTCAGAATGATCATCACAAGCTCATGATCAATAACAATGGAGGTGGGTCGAGATCGTTTCTTAATAATTACCACGAATCAAGCTCTACTACAATGAACATGATGGCATCCATTGTTAAGGAAGCTTCATATTATAATTCTTCAGAAACTTGCAGTTCCAACTTGTATAGGAGTACTAGTACTCCTGTAATGTTCAATGGGAACTACTACTTCACCGGGTCGAATATCCACCCACCATTTTTCTCGGGGTCGAGTAATAGCAACTCCCATCTGTCAATGTCCATGGACTTTTCTATGGGGAATCATCATAATACTAACAATAATGACAGGAACCCTAAATATTCCTCCTACTATGAGGATCATCACCACCCTGAGGAAGAGGATTGCTTGAACCAGGAAATTAGTGAAAGCAATGTGGATCAAGATCAGTCTACTAATGTAAACAGCCAGGAGGTTCGTGATCAAGACAACATTAAAAATTTCAATGTAGAGAACGAACCTGCATTCACACCACAAGAGGATAAGAATAATCTTCTTCTGAACTCTAAGATCAAGCGATCGCGAAGCTCGGGAGATTTGCTGATGAAGAGCAAGAGGAATGTAAGGTCAAAGAAGATTCAAAAGCTTACTAATGCATTGACAAGCAGCAACAACTTAGAAGAAGATGGTAACATTAATGGTGGTGGAAATGGGCAGAGTACAAGCAGTACTTGCTGGTCAGAAGAGGACGAGTCGGCTATTAACGGCAGCTTTTTGGAGCTCAATGGAGGATCAGGGGTGAGTTCAACCTCATGCCCTAAAGGCTCCATCGGCAATATCCGAGCCAATCGGGGATCGGCCACCGATCCTCAAAGCCTCTATGCTAGGAAAAGAAGAGAGAGGATCAACGAGAGGCTGAAAATCCTACAGAACTTAGTCCCTAATGGAACTAAGGTTGATATTAGCACAATGCTTGAGGAAGCAGTACAGTATGTGAAGTTTCTACAGCTCCAAATCAAGTTGTTAAGCTCTGATGATTTATGGATGTATGCTCCGATTGCATTCAATGGCATGGACCTAGGGCTTGATTTGAAGCTAATGACCGCACCAAGACAATCATAG 1206 42.45 MEPIGDISEGEWSSLSGMYTAEESDFMARLLNSCPSQNDHHKLMINNNGGGSRSFLNNYHESSSTTMNMMASIVKEASYYNSSETCSSNLYRSTSTPVMFNGNYYFTGSNIHPPFFSGSSNSNSHLSMSMDFSMGNHHNTNNNDRNPKYSSYYEDHHHPEEEDCLNQEISESNVDQDQSTNVNSQEVRDQDNIKNFNVENEPAFTPQEDKNNLLLNSKIKRSRSSGDLLMKSKRNVRSKKIQKLTNALTSSNNLEEDGNINGGGNGQSTSSTCWSEEDESAINGSFLELNGGSGVSSTSCPKGSIGNIRANRGSATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAFNGMDLGLDLKLMTAPRQS 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8728788 8730270 - Conep12aG0108200.1 Cone12ag1048 449892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1048 401 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 121 374 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag1048 401 MobiDBLite consensus disorder prediction 252 273 - -
Cone12ag1048 401 MobiDBLite consensus disorder prediction 137 164 - -
Cone12ag1048 401 SMART finulus 320 369 IPR011598 GO:0046983(InterPro)
Cone12ag1048 401 Gene3D - 316 372 IPR036638 GO:0046983(InterPro)
Cone12ag1048 401 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 314 363 IPR011598 GO:0046983(InterPro)
Cone12ag1048 401 FunFam Basic helix-loop-helix transcription factor 315 372 - -
Cone12ag1048 401 Pfam Helix-loop-helix DNA-binding domain 324 364 IPR011598 GO:0046983(InterPro)
Cone12ag1048 401 MobiDBLite consensus disorder prediction 298 318 - -
Cone12ag1048 401 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 313 380 IPR036638 GO:0046983(InterPro)
Cone12ag1048 401 MobiDBLite consensus disorder prediction 149 164 - -
Cone12ag1048 401 CDD bHLH_AtIND_like 315 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1048 Cone-Chr12:8728788 Cone4ag0604 Cone-Chr4:2769142 5.04E-16 dispersed
Cone16ag0535 Cone-Chr16:7353606 Cone12ag1048 Cone-Chr12:8728788 2.23E-20 transposed
Cone10ag1041 Cone-Chr10:7267596 Cone12ag1048 Cone-Chr12:8728788 2.65E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44496 PF06708 DUF1195 7.20E-76 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1048 - - - 0.0