Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1053 ATGTTTTGGAACTTGAATTATTGGGAAAAGGCAAGTACTCTGGCCGGAGAGGTGGAGAATCCGAGCGAGACGTCTCCTAGGGAAAAATATGGGACCCCTACTATTAGCATTTTATGTTCTGCAACTGGGGTCATGTTCTTATCATGGATGAGCTTCCGAGAAATACTAGACTTTCTCAACTTCCTCTACACCATTGGAATGCTTCTCCAGTTTGCTGCTTTTATCAAACTGAGGATGAAATTACCGGACCTTCACCGACCTTATAAAGTTCCTCTGCAAACATTCTGGGCATCTATGCTCTGTCTGCCTCCTGTATTCTTGCTTGTTCTTGTGATGTTTTTGGCTTCTGTTAGAACGGTTGTTAGTAGTGCTGTAATTGTTGTGGGGGTTGTACTCTACGCTGCTTTAGTTCAAGCAAAAGAAAGGAAGCGGGTCCATTTTAAGGATGAAGAGGATATATCTGTGGGACTACCCTCTGATAGCTTCCACGAGGTGGAAGATCCATCGATTGTATCACGGCTGCTTCAAGAGGACGTTGATGAAGCAGAACATATCATGAAACTAAAGCAGAGTTCAAACACCACACAGATTGTCAAGAAATATGCTTTTTCGGGAATATTGAAGCGAGAGTTTAGCAAGGTTGGTATAGGAGGGGAGTATTATAATGAAGAGGATGAGCAAGAAATGAAGTGTAAAGGGAACAATGATGTGGAGTACTACAGTGCGTATTGGGTACCTCATCCTCGTACAGGGATTTACATTCCAGAAGGGCAGGAAGGGGTGATGAAGGATGTTCCAGATACTGCAGCTTCCTTTCGGGATACTTTCTGGCTCCGTAACATCAATGGTGTCGAAAAACCGGACCCTCTTGACCCGGCAGCAACCATGGATATCGATCGATACTGCTTCTCTGTCAACTTGCATCGTTAG 930 44.19 MFWNLNYWEKASTLAGEVENPSETSPREKYGTPTISILCSATGVMFLSWMSFREILDFLNFLYTIGMLLQFAAFIKLRMKLPDLHRPYKVPLQTFWASMLCLPPVFLLVLVMFLASVRTVVSSAVIVVGVVLYAALVQAKERKRVHFKDEEDISVGLPSDSFHEVEDPSIVSRLLQEDVDEAEHIMKLKQSSNTTQIVKKYAFSGILKREFSKVGIGGEYYNEEDEQEMKCKGNNDVEYYSAYWVPHPRTGIYIPEGQEGVMKDVPDTAASFRDTFWLRNINGVEKPDPLDPAATMDIDRYCFSVNLHR 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8752147 8754419 + Conep12aG0108700.1 Cone12ag1053 449897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1053 309 Gene3D Amino acid/polyamine transporter I 27 156 - -
Cone12ag1053 309 PANTHER POLYAMINE TRANSPORTER PUT1 1 27 IPR044566 GO:0022857(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1053 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1053 Cone-Chr12:8752147 Cone8ag0532 Cone-Chr8:3901957 1.53E-25 dispersed
Cone8ag1087 Cone-Chr8:9791018 Cone12ag1053 Cone-Chr12:8752147 2.71E-49 transposed
Cone12ag1053 Cone-Chr12:8752147 Cone8ag1086 Cone-Chr8:9788486 2.97E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g686 . . . . . . . . Cmo19g00573 . . . . . . . Cpe15g00447 . . . . . . . Cla02g00673 Cam02g0707 Cec02g0720 Cco02g0741 Clacu02g0714 Cmu02g0711 Cre02g1025 Cone12ag1053 Cone8ag1086 . . Lsi03g00567 Csa07g00693 . Cme01g00112 . . . Bda14g01471 . . Bma03g01381 . . . . . Cma19g00560 . Car19g00418 . . . . . . . . . . . . . . . . . . Chy01g00122 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007481 1 1 0 2 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 34