Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1055 ATGTTGAGGTCGGTGTGCAGGCCGTTAGAGCGGTGTTTTGGCCGGAGAGGTGGCGACGGGCTCTTGTGGCATACGGACTTGAAGCCGCATGCCTCCGGAGATTTCTCGATCGCCGTCGTTCAAGCAAATTCTAGACTCGAGGATCAGGGCCAGGTTTTCACCTCTCCATCCGCCACTTACGTCGGTGTCTACGACGGCCATGGCGGTCCCGACGCTTCTCGCTTCGTTAATAAGCATCTCTTTCCTTATTTACTGAAATTTTCTACAGAGCAAGGAGGACTATCAGAGGACGTTATAAAGAAGGCATTTAATGCTACAGAAGAGGAGTTCTTGCGCCTGGTGAAACGAGCAGTATCAGTTGTGCCACAAATAGCTGCAGTTGGATCATGCTGTCTCTTTGGTGCGATTTCAAATAATTTGTTGTATGTAGCCAATCTCGGAGACTCAAGGGCAGTTCTTGGTCGATTAGTTTCTGATAGGAGGAAGAAGAGTAGAGTAGTGGCAGAGAGGTTGTCTACTGATCACAATGTAGCAGTTGATGAGGTTAGGAAAGAAGTTGAAGCACTTCATCCTGATGATTCACATATTGTGGTGTATTCTCGTGGTGTTTGGAGGATCAAGGGCATAATTCAGGTGTCACGATCAATAGGTGATGTTTATCTTAAGAAACCTGAATTCAACCGGCAATTTGGGACCCCTCCCTTAATGCGGCCCGTAATTACAGCAGAACCCTCAATCCTTGTTAGAGAGCTCAGACCACAAGACTCCTTCCTGATATTTGCATCAGATGGCCTTTGGGAACAGCTTAGTGATGAAGCTGCAGTTGAGATCGTATTTAAGAACCCAAGAGCAGGAATTGCCAAGAGGCTAGCGAGAGCTGCCCTTCAAGTGGCCGCAAGGAAAAGAGAGATGCGATATAAAGACTTGAAGAAAATTGATAAGGGGATAAGACGGCATTTTCATGATGATATAACCGTTATAGTCATTTACCTTGATCAGAGTAGAAGCTCCTCAAATGGAAGATCAAGAAACAACGGCATTAGCTGTACTAGCGTGCCTGTTGATATCTTCTCTCTAGATGCAGATGATGAAGAAAAAGGAGATACATCTCACATGCTCTCCTAG 1125 45.96 MLRSVCRPLERCFGRRGGDGLLWHTDLKPHASGDFSIAVVQANSRLEDQGQVFTSPSATYVGVYDGHGGPDASRFVNKHLFPYLLKFSTEQGGLSEDVIKKAFNATEEEFLRLVKRAVSVVPQIAAVGSCCLFGAISNNLLYVANLGDSRAVLGRLVSDRRKKSRVVAERLSTDHNVAVDEVRKEVEALHPDDSHIVVYSRGVWRIKGIIQVSRSIGDVYLKKPEFNRQFGTPPLMRPVITAEPSILVRELRPQDSFLIFASDGLWEQLSDEAAVEIVFKNPRAGIAKRLARAALQVAARKREMRYKDLKKIDKGIRRHFHDDITVIVIYLDQSRSSSNGRSRNNGISCTSVPVDIFSLDADDEEKGDTSHMLS 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8757750 8760212 + Conep12aG0108900.1 Cone12ag1055 449899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1055 374 CDD PP2Cc 41 331 IPR001932 -
Cone12ag1055 374 Gene3D - 25 341 IPR036457 -
Cone12ag1055 374 SUPERFAMILY PP2C-like 42 332 IPR036457 -
Cone12ag1055 374 SMART PP2C_4 24 329 IPR001932 -
Cone12ag1055 374 ProSitePatterns PPM-type phosphatase domain signature. 60 68 IPR000222 GO:0043169(InterPro)
Cone12ag1055 374 PANTHER PROTEIN PHOSPHATASE 29 330 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone12ag1055 374 Pfam Protein phosphatase 2C 56 299 IPR001932 -
Cone12ag1055 374 ProSiteProfiles PPM-type phosphatase domain profile. 34 331 IPR001932 -
Cone12ag1055 374 FunFam Probable protein phosphatase 2C 42 25 339 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1055 Cone-Chr12:8757750 Cone8ag1300 Cone-Chr8:10628497 1.90E-131 dispersed
Cone10ag1033 Cone-Chr10:7202376 Cone12ag1055 Cone-Chr12:8757750 5.23E-184 wgd
Cone12ag1055 Cone-Chr12:8757750 Cone3ag1016 Cone-Chr3:28992709 3.34E-188 wgd
Cone12ag1055 Cone-Chr12:8757750 Cone8ag1089 Cone-Chr8:9794240 8.30E-252 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1055 - - - 0.0