Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1061 ATGATTAATGAACGTGCTATATGCAAAATTTCCCCGCCACCCGGGTTTGTGATTATCCGGCTCGACTGGGCAAAAGCTGTTGCTGGAAGCCCATACAACAGCCCGGCCCATAACTCCGCACAAGCTGTCCGCCTATCACAAAGGAACGACGCCGTTGAGAGTATTCGCCAATCTTCTTCGACTAGGAATTTTGAAAATCCCTCTCTGCCCTCTACAGCATCTCCATTCCATTTCGAACTTCTGCGAGGGAGATCTTGTCAGCTTCCAACAATGGACAATTCTAAAGTTCAGGAGATTTTGGAGAAGCAGATGCTGACAGTGGCCAAGGCCGTCGAGGAAAAGATCGATGGGGAAATCGCAGCTCTAGATCGCCTCGATATGGATGATATAGAGGCGCTTAGAGAGCGGAGGTTGCAGCATATGAAGAAAATGGCGGAGAAGCGTAGCCGTTGGATCTCTCTCGGCCACGGCGAATACAGCGAGATCCAGTCCGAGAAGGATTTTTTCTCCATTGTCAAAGCTAGCGATCGTGTTGTCTGCCACTTTTATCGTGATAACTGGCCCTGCAAGGTAGTGGACAAGCACTTGAGTATTTTGGCAAAGCAGCACATCGAGACACGTTTTGTGAAAATCCAAGCTGAGAAGAGTCCGTTCTTGGCTGAAAAGCTTAAGATTGTTGTTCTTCCTACCCTCGCTCTTATTAAGAATGCTAAAGTTGATGACTATGTGGTCGGATTTGATCAGCTTGGTGGGACCGACGAATTCAGCACTGAAGAACTGGAGGAGAGGTTAGCTAAATCTCAAGTTATATTTTTTGAGGGCGAATCATCCTTGAAATCCAGTTCACAAACTAAAAGAAGTGTCAGACAAGGTGTAAAGTCAGATTCATCCGATTCAGAGTAA 903 46.62 MINERAICKISPPPGFVIIRLDWAKAVAGSPYNSPAHNSAQAVRLSQRNDAVESIRQSSSTRNFENPSLPSTASPFHFELLRGRSCQLPTMDNSKVQEILEKQMLTVAKAVEEKIDGEIAALDRLDMDDIEALRERRLQHMKKMAEKRSRWISLGHGEYSEIQSEKDFFSIVKASDRVVCHFYRDNWPCKVVDKHLSILAKQHIETRFVKIQAEKSPFLAEKLKIVVLPTLALIKNAKVDDYVVGFDQLGGTDEFSTEELEERLAKSQVIFFEGESSLKSSSQTKRSVRQGVKSDSSDSE 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8780227 8782414 + Conep12aG0109500.1 Cone12ag1061 449905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1061 300 Pfam Thioredoxin 164 245 IPR013766 -
Cone12ag1061 300 MobiDBLite consensus disorder prediction 276 290 - -
Cone12ag1061 300 MobiDBLite consensus disorder prediction 276 300 - -
Cone12ag1061 300 PANTHER THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 87 299 - GO:0000226(PANTHER)|GO:0005737(PANTHER)
Cone12ag1061 300 SUPERFAMILY Thioredoxin-like 94 268 IPR036249 -
Cone12ag1061 300 Coils Coil 130 150 - -
Cone12ag1061 300 CDD Phd_like_TxnDC9 155 265 - -
Cone12ag1061 300 Gene3D Glutaredoxin 139 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1061 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1061 Cone-Chr12:8780227 Cone9ag1570 Cone-Chr9:11320995 2.39E-32 dispersed
Cone12ag1061 Cone-Chr12:8780227 Cone8ag1094 Cone-Chr8:9816315 1.01E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g662 Blo02g00941 Blo03g00083 . Bda08g00669 . . Bma05g00670 . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1061 Cone8ag1094 . . . . . . . . . . . Bpe05g00486 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005152 1 4 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 39