Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1069 ATGGGTAGTATCGAAGGTGAGAGAACAGTTACAGGATTTGCAGCAACAGGCCCATCTGGGATTCTCTCTCCTTACACTTACACTCTCAGAAACACAGGCCCTGATGATGTGTACCTCAAAGTGATCTGCTGTGGTGTCTGTCATTCTGATCTCCATCAGGTCAAAAATGAGCTCGGCATGTCCAACTACCCTATGGTTCCTGGGCACGAAGTGGTGGGTGAGGTTGTGGAGGTGGGATCCAATGTGACTCGGTTCATAGAAGGTGACGTGATCGGAGTAGGCTGCATCGTTGGATCCTGCTCCAGGTGTACGCCTTGCACTTCAGACAAAGAGCAGTACTGCAGCAAGAAAATCTGGACCTACAACGATGTCTACGGCGACGGAAAGCCCACTCAAGGTGGCTTCGCCGGTGCCATGGTGGTTCACCAAAAGTTTGTGGTGAAAATACCGGAAGGGATGGCACCAGAACAAGCAGCGCCGTTGCTGTGTGCTGGAGTGACTGTGTTTAGCCCACTGAGCCATTTCGGGCTGAAGCAGAGCGGGCTGAGAGGAGGGATTTTGGGCCTTGGAGGTGTGGGCCATATGGGGGTTAAGGTAGCCAAGGCATTGGGCCACCATGTGACTGTCATTAGCTCTTCCAACAAGAAGAGAGAAGAAGCCTTGCACCATCTCGGAGCGGACGAGTATTTGGTTAGCTCCGACTCCACCCGGATGCAAGAACCTGCTGAGTCACTAGACTACATTATCGATACAGTGCCTGTAAATCACCCTCTGGAGCCATACCTCTCTTTGCTCAAGCTTGAAGGGAAATTGATCTTGATGGGTGTCATTAATTCCCCTCTGCAATTTGTTTCTCCTATGCTCATGCTTGGGAGGAAATCTATTACAGGGAGTTTTATAGGGAGCATGAAGGAGACTCAAGAAATACTGGATTTCTTCAAGGAGAAGGAGCTGACCTCCATGATTGAAGTTATCAAGCTCGATTACATAAACAAGGCGTTCGAAAGGTTGGAGAAGAACGATGTTAGATACAGGTTTGTTGTTGATGTTGCAGGAAGCAAGCTTGATCAGTGA 1074 49.35 MGSIEGERTVTGFAATGPSGILSPYTYTLRNTGPDDVYLKVICCGVCHSDLHQVKNELGMSNYPMVPGHEVVGEVVEVGSNVTRFIEGDVIGVGCIVGSCSRCTPCTSDKEQYCSKKIWTYNDVYGDGKPTQGGFAGAMVVHQKFVVKIPEGMAPEQAAPLLCAGVTVFSPLSHFGLKQSGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSNKKREEALHHLGADEYLVSSDSTRMQEPAESLDYIIDTVPVNHPLEPYLSLLKLEGKLILMGVINSPLQFVSPMLMLGRKSITGSFIGSMKETQEILDFFKEKELTSMIEVIKLDYINKAFERLEKNDVRYRFVVDVAGSKLDQ 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8816572 8818420 + Conep12aG0110300.1 Cone12ag1069 449913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1069 357 FunFam probable cinnamyl alcohol dehydrogenase 13 170 - -
Cone12ag1069 357 Gene3D - 13 350 - -
Cone12ag1069 357 FunFam Putative cinnamyl alcohol dehydrogenase 6 321 350 - -
Cone12ag1069 357 PANTHER ALDEHYDE REDUCTASE 9 352 IPR047109 GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER)
Cone12ag1069 357 Gene3D - 164 320 - -
Cone12ag1069 357 SUPERFAMILY GroES-like 15 181 IPR011032 -
Cone12ag1069 357 Pfam Zinc-binding dehydrogenase 191 314 IPR013149 -
Cone12ag1069 357 SMART PKS_ER_names_mod 20 348 IPR020843 GO:0016491(InterPro)
Cone12ag1069 357 FunFam Cinnamyl alcohol dehydrogenase 164 320 - -
Cone12ag1069 357 Pfam Alcohol dehydrogenase GroES-like domain 33 151 IPR013154 -
Cone12ag1069 357 CDD CAD1 11 349 IPR047109 GO:0016616(InterPro)
Cone12ag1069 357 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Cone12ag1069 357 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 318 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1069 Cone-Chr12:8816572 Cone8ag0057 Cone-Chr8:295123 6.51E-128 dispersed
Cone12ag1069 Cone-Chr12:8816572 Cone3ag1002 Cone-Chr3:28822246 2.31E-110 wgd
Cone12ag1069 Cone-Chr12:8816572 Cone8ag1104 Cone-Chr8:9854077 3.76E-244 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1069 K00083 - csv:101222395 603.979