Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone12ag1075 | ATGGCTCAGGTTCAATCTCAGCCTCAAAATGCGGGTTCTGGTGCTAACCCCGCCGCTAATGGTGCTGGAGCTAACCAGTTCGTGACCACGTCCATGTACGTTGGAGATCTTGATCCGAATGTGACGGATTCGCAGCTTTTCGACCTTTTCAGTCAGGTCGGTCAGGTCGTTTCGGTTAGGGTTTGCAGGGACTTGACGACTCGACGATCCCTGGGTTATGGATACGTCAACTATGGCAACCAACAGGAGGCTGCTAGGGCATTGGATGTGCTGAACTTCACTCCTCTGAATGGGAGGCCCATAAGAATCATGTATTCTCACCGTGACCCTAGTATCCGAAAGAGTGGAACTGGAAATATATTCATTAAGAATCTGGACAAGGCAATTGACCACAAAGCACTACAGGACACATTTTCTGCCTTCGGGAATGTTCTGTCTTGCAAGGTTGCCACAGATTCGGTTGGACAGTCTAAAGGCTATGGTTTTGTGCAATTTGACAGTGAGGAATCTGCACAAAAAGCAATAGAGAAGCTGAATGGAATGCTGTTGAACGATAAGCAAGTCTTTGTTGGACCTTTCCTTCGTAAGCATGAAAGAGAGAGTGAAATTGGCAAGTCAAAATTCAACAATGTCTTTGTAAAGAATCTCTCTGAGTCCACGACTGAAGAAGATTTGAAGAATAGTTTTGGCGAATTTGGGCCACTCGCTAGTGTTGTCATTATGAGGGATGCAGATGGTAAATCAAGATGCTTTGGGTTTGTGAACTTTGAGAATACTGATGATGCCGCTAATGCTGTTGAGGCACTTAACGGGAAAAAAATTGATGGGAATGAGTGGTTTGTTGGGAAAGCCCAGAAGAAATCTGATAGGGAAGTTGAATTGAAACAAAAATTCGAGCAAAGCATGAAAGAGACAGCTGACAAATTTCAGGGTGCTAACTTGTATGTTAAGAATTTAGATGATAGCATAACTGATGAAAGACTTGCAGAGCTCTTCTCTCCATTTGGCGCCATTACCTCATGCAAGGTAATGAAAGATCCTAATGGAATAAGTAGAGGATCTGGTTTTGTTGCGTTCTCAACTCCTGAAGAGGCTGCTAAAGCTCTTGCCGAGATGAATGGAAAAATGGTTGTGAGCAAACCTCTGTATGTAGCAGTTGCGCAGAGGAAAGAAGAGAGAAGGGCCAGGTTGCAGGCGCAGTTTTCTCAAATGCAGCCGGTTGCAATGGCACCTTCCGTTGCTCCTCGCATGCCAATGTATCCCGCTGGTGGGCCAGGTATGGGACAACAGTTATTTTACGGCCAAGCTCCACCTGCTATGATTCCTTCCCAGCCCGGCTTTGGCTATCAACAACAACTTGTTCCTGGAATGAGGCCTGGTGGGGCCCCCATGCCCAATTTCTTTGTACCAATGGGTCAGCAGGGTCAGCGCCCAGGTGGCAGACGTGCTGGACCTGTCCAGCAAAGCCAGCAACCTGTTCCACTAATGCAGCAACAGATGTTCCCAAGGGGTCGGGTCTACCGTTATCCCCCTGGCCGGGGCTTACCTGATGTCACTTTGCCTGGAGTTGCTGGAGGCATGTTCTCCGTCCCATATGACATGGGTGGAATGCCTCTCCGCGATGCTCCACCTCACAATCAGCCAATGCCAATCAGTGCTTTGGCCACTTCTCTTGCAAATGCTTCTCCAGAACAGCAGAGAACGATGCTGGGTGAGAATCTATACCCACTTGTGGATCAGCTGGAGCCAGATAATGCGGCTAAGGTTACAGGGATGCTTCTGGAAATGGACCAGACAGAGGTTTTGCATTTGCTGGAGTCTCCGGAAGCTTTGAAAGCTAAGGTGGCGGAGGCTATGGAAGTTCTGAGGAATGTTGCTCAGCAGCAACAAGCCGGGAATGCAGCTGATCAGCTGGCTTCTCTGTCGCTGAATAACAGTCTCGATTCCTGA | 1950 | 48.05 | MAQVQSQPQNAGSGANPAANGAGANQFVTTSMYVGDLDPNVTDSQLFDLFSQVGQVVSVRVCRDLTTRRSLGYGYVNYGNQQEAARALDVLNFTPLNGRPIRIMYSHRDPSIRKSGTGNIFIKNLDKAIDHKALQDTFSAFGNVLSCKVATDSVGQSKGYGFVQFDSEESAQKAIEKLNGMLLNDKQVFVGPFLRKHERESEIGKSKFNNVFVKNLSESTTEEDLKNSFGEFGPLASVVIMRDADGKSRCFGFVNFENTDDAANAVEALNGKKIDGNEWFVGKAQKKSDREVELKQKFEQSMKETADKFQGANLYVKNLDDSITDERLAELFSPFGAITSCKVMKDPNGISRGSGFVAFSTPEEAAKALAEMNGKMVVSKPLYVAVAQRKEERRARLQAQFSQMQPVAMAPSVAPRMPMYPAGGPGMGQQLFYGQAPPAMIPSQPGFGYQQQLVPGMRPGGAPMPNFFVPMGQQGQRPGGRRAGPVQQSQQPVPLMQQQMFPRGRVYRYPPGRGLPDVTLPGVAGGMFSVPYDMGGMPLRDAPPHNQPMPISALATSLANASPEQQRTMLGENLYPLVDQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNAADQLASLSLNNSLDS | 649 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 8843279 | 8846703 | - | Conep12aG0110900.1 | Cone12ag1075 | 449919 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone12ag1075 | 649 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 312 | 389 | IPR000504 | GO:0003723(InterPro) | |
| Cone12ag1075 | 649 | CDD | RRM4_I_PABPs | 311 | 389 | - | - | |
| Cone12ag1075 | 649 | Pfam | Poly-adenylate binding protein, unique domain | 558 | 622 | IPR002004 | GO:0003723(InterPro) | |
| Cone12ag1075 | 649 | Pfam | RNA recognition motif | 211 | 278 | IPR000504 | GO:0003723(InterPro) | |
| Cone12ag1075 | 649 | Pfam | RNA recognition motif | 120 | 187 | IPR000504 | GO:0003723(InterPro) | |
| Cone12ag1075 | 649 | Pfam | RNA recognition motif | 33 | 102 | IPR000504 | GO:0003723(InterPro) | |
| Cone12ag1075 | 649 | Pfam | RNA recognition motif | 314 | 382 | IPR000504 | GO:0003723(InterPro) | |
| Cone12ag1075 | 649 | CDD | RRM3_I_PABPs | 208 | 287 | - | - | |
| Cone12ag1075 | 649 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 209 | 286 | IPR000504 | GO:0003723(InterPro) | |
| Cone12ag1075 | 649 | FunFam | Polyadenylate-binding protein | 200 | 294 | - | - | |
| Cone12ag1075 | 649 | SMART | rrm1_1 | 31 | 104 | IPR000504 | GO:0003723(InterPro) | |
| Cone12ag1075 | 649 | SMART | rrm1_1 | 119 | 191 | IPR000504 | GO:0003723(InterPro) | |
| Cone12ag1075 | 649 | SMART | rrm1_1 | 210 | 282 | IPR000504 | GO:0003723(InterPro) | |
| Cone12ag1075 | 649 | SMART | rrm1_1 | 313 | 385 | IPR000504 | GO:0003723(InterPro) | |
| Cone12ag1075 | 649 | SUPERFAMILY | PABC (PABP) domain | 490 | 643 | IPR036053 | GO:0003723(InterPro) | |
| Cone12ag1075 | 649 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 30 | 108 | IPR000504 | GO:0003723(InterPro) | |
| Cone12ag1075 | 649 | FunFam | Polyadenylate-binding protein | 17 | 115 | - | - | |
| Cone12ag1075 | 649 | SUPERFAMILY | RNA-binding domain, RBD | 209 | 392 | IPR035979 | GO:0003676(InterPro) | |
| Cone12ag1075 | 649 | Gene3D | - | 295 | 402 | IPR012677 | - | |
| Cone12ag1075 | 649 | Gene3D | - | 1 | 117 | IPR012677 | - | |
| Cone12ag1075 | 649 | FunFam | Polyadenylate-binding protein | 546 | 628 | - | - | |
| Cone12ag1075 | 649 | SUPERFAMILY | RNA-binding domain, RBD | 30 | 199 | IPR035979 | GO:0003676(InterPro) | |
| Cone12ag1075 | 649 | PANTHER | RNA BINDING PROTEIN | 22 | 211 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) | |
| Cone12ag1075 | 649 | FunFam | Polyadenylate-binding protein | 116 | 199 | - | - | |
| Cone12ag1075 | 649 | SMART | rrm2_1 | 210 | 282 | IPR003954 | GO:0003676(InterPro) | |
| Cone12ag1075 | 649 | SMART | rrm2_1 | 119 | 191 | IPR003954 | GO:0003676(InterPro) | |
| Cone12ag1075 | 649 | SMART | rrm2_1 | 31 | 104 | IPR003954 | GO:0003676(InterPro) | |
| Cone12ag1075 | 649 | SMART | rrm2_1 | 313 | 385 | IPR003954 | GO:0003676(InterPro) | |
| Cone12ag1075 | 649 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 31 | 623 | IPR006515 | GO:0003723(InterPro) | |
| Cone12ag1075 | 649 | SMART | poly_2 | 562 | 625 | IPR002004 | GO:0003723(InterPro) | |
| Cone12ag1075 | 649 | Gene3D | - | 546 | 629 | - | - | |
| Cone12ag1075 | 649 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 550 | 627 | IPR002004 | GO:0003723(InterPro) | |
| Cone12ag1075 | 649 | CDD | RRM1_I_PABPs | 31 | 110 | IPR034364 | - | |
| Cone12ag1075 | 649 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 118 | 190 | IPR000504 | GO:0003723(InterPro) | |
| Cone12ag1075 | 649 | FunFam | Polyadenylate-binding protein | 295 | 400 | - | - | |
| Cone12ag1075 | 649 | Gene3D | - | 118 | 191 | IPR012677 | - | |
| Cone12ag1075 | 649 | CDD | RRM2_I_PABPs | 116 | 192 | IPR045305 | - | |
| Cone12ag1075 | 649 | Gene3D | - | 194 | 294 | IPR012677 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone10ag1002 | Cone-Chr10:6851848 | Cone12ag1075 | Cone-Chr12:8843279 | 0 | dispersed | |
| Cone11ag0735 | Cone-Chr11:5104330 | Cone12ag1075 | Cone-Chr12:8843279 | 2.91E-13 | dispersed | |
| Cone12ag1075 | Cone-Chr12:8843279 | Cone3ag0982 | Cone-Chr3:28625860 | 0 | dispersed | |
| Cone12ag1075 | Cone-Chr12:8843279 | Cone8ag1121 | Cone-Chr8:9919319 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone12ag1075 | K13126 | - | csv:101219802 | 1012.68 |