Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1078 ATGGAGAGGCCAGGCTGCGAGTCGAGGGCGGAAGATAATGAGGAGGAGGAGATTATGAAGCGGGAGTCCGAATCCTGCTGGTTAGGACTTGATAAACTTGTCCCTCCTTATGAAGTTGCCACCGTTAGTCTGATGAATGGAGTCAACAGAGAAGCATTGGAAGTTATCACAGGAGGAGGAGGAGGAGGGGGTGGTGGAGGTGGTGGAGGTGGTGGAGGTGGAGGTGGAGGTGGTGGAGGTCATGCAGGTGGTGGAGGGGGAGGTGGGGGTGGGGGCGGAGGAGGTGGGGGAGGTGGAGGAGGAGGTGGCGGAGGAGGTGGCGGAGGTGGAGGCTTTGCACCTCGTCCTCCGTCACCACCACCTCCGCCTCCGTCACCACCGCCACCACCTCCACCTCCGCCTCCCCCACCTCCTCCGCCGCCGCCGCCGCCGCCACGATTCATCAACAAGCGAATAGAAAATTCGTACCACGTAATTCATAAACTCAAATCGAAGATTGAGCGCGATCCAAAAGGAATCACAAAGACGTGGAAAGGCACAAACGTCTGCAACTACGCCGGATTCCTCTGTTACATAAATCCAGCACACAACGAAACAGCGATCGCCGGAGTCTACTTCAACGGCTTTTCCCTCGCCGGCCCCGATCTTTCCCTCGCCGGCTTCCTCGACGAATTACCAGACCTCAATGTCTTCCACGCAAACTCCAACCATTTCCTCGGCAGCCTCCCTGACAGAATCGGCAAGCTCCGTTACTTCGCCGAGATCGACCTCAGCAACAACAAATTATCAGGCGCGTTTCCGATTCAAATTCTAGCGGCCACGAATCTAACCTTCTTAGATCTCCGGTTCAACAGCTTTTCCGGTTCAGTTCCCCCCCAAATTTTCAGTCTAGATGTGAACGCGATTTTTATCAACAACAACGGATTTAACCAACCGCTTCCTTCCAATCTCGGTTCAACTCCGGCTCTCTACCTCACTTTCGCTAACAACGAGTTCACTGGGCCGATCCCAAACAGCATTGGGCTTGGGCTTTCCAGAGAAAGTCTCGTTGAGGTACTTCTCTTGAACAATAAGCTTTCAGGGTGCTTGCCGTATGGAATGGGCCTGTTGAAAAAAGCCGCCTTGTTGGACATGAGCAAGAACCGGCTAACAGGCCCAATACCGTACTCATTTGCATGTTTGGGCCGGTTGGAGGTTCTGAACTTGGGAGAGAATCAGTTTTATGGGCCGGTACCTGAGGTGGTCTGCAAGTTACCTAAGCTTGGGAACTTGACGCTGAGAAATAATTACTTCACACAAGTTGGGCCTGAATGCAGGAAGCTGATAAAGAGCGGGATTCTTGATGTTTCAAAGAACTGCATTTTGGACCTCCCGGCCCAGAGACCAAAGGGTGAATGTGAAGAATTTTTCTCTAGGCCCAAATACTGTCAGAATGAGAAGTGGCTTACCTACATTCCTTGCAAGAACAGGTGCTACTTAAATCAGTCCAACTGCAGTTCTGATCCTAGTCGTCCAGTATCTGCTTCGCCTAGTTCAATGAGGTCTTATGGGGCCCTCATACCCCATTGA 1569 52.39 MERPGCESRAEDNEEEEIMKRESESCWLGLDKLVPPYEVATVSLMNGVNREALEVITGGGGGGGGGGGGGGGGGGGGGGGHAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFAPRPPSPPPPPPSPPPPPPPPPPPPPPPPPPPPRFINKRIENSYHVIHKLKSKIERDPKGITKTWKGTNVCNYAGFLCYINPAHNETAIAGVYFNGFSLAGPDLSLAGFLDELPDLNVFHANSNHFLGSLPDRIGKLRYFAEIDLSNNKLSGAFPIQILAATNLTFLDLRFNSFSGSVPPQIFSLDVNAIFINNNGFNQPLPSNLGSTPALYLTFANNEFTGPIPNSIGLGLSRESLVEVLLLNNKLSGCLPYGMGLLKKAALLDMSKNRLTGPIPYSFACLGRLEVLNLGENQFYGPVPEVVCKLPKLGNLTLRNNYFTQVGPECRKLIKSGILDVSKNCILDLPAQRPKGECEEFFSRPKYCQNEKWLTYIPCKNRCYLNQSNCSSDPSRPVSASPSSMRSYGALIPH 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8852791 8855165 - Conep12aG0111200.1 Cone12ag1078 449922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1078 522 Pfam Leucine Rich Repeat 275 297 IPR001611 GO:0005515(InterPro)
Cone12ag1078 522 Pfam Leucine Rich Repeat 376 394 IPR001611 GO:0005515(InterPro)
Cone12ag1078 522 SUPERFAMILY L domain-like 162 455 - -
Cone12ag1078 522 MobiDBLite consensus disorder prediction 499 522 - -
Cone12ag1078 522 MobiDBLite consensus disorder prediction 113 148 - -
Cone12ag1078 522 Gene3D Ribonuclease Inhibitor 152 348 IPR032675 -
Cone12ag1078 522 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 144 493 IPR051582 -
Cone12ag1078 522 Gene3D Ribonuclease Inhibitor 349 500 IPR032675 -
Cone12ag1078 522 MobiDBLite consensus disorder prediction 89 149 - -
Cone12ag1078 522 MobiDBLite consensus disorder prediction 1 25 - -
Cone12ag1078 522 MobiDBLite consensus disorder prediction 499 514 - -
Cone12ag1078 522 PRINTS Wilm's tumour protein signature 97 113 - -
Cone12ag1078 522 PRINTS Wilm's tumour protein signature 129 143 - -
Cone12ag1078 522 MobiDBLite consensus disorder prediction 62 81 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1078 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1078 Cone-Chr12:8852791 Cone3ag0990 Cone-Chr3:28702515 1.43E-60 dispersed
Cone10ag1007 Cone-Chr10:6961823 Cone12ag1078 Cone-Chr12:8852791 7.72E-52 wgd
Cone12ag1078 Cone-Chr12:8852791 Cone20ag0204 Cone-Chr20:878474 1.59E-47 wgd
Cone12ag1078 Cone-Chr12:8852791 Cone4ag1593 Cone-Chr4:12161991 3.08E-50 wgd
Cone12ag1078 Cone-Chr12:8852791 Cone8ag1115 Cone-Chr8:9899313 1.87E-148 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g379 . . . . . Bpe12g00048 . . Cmo19g00609 . . . . . . . Cpe15g00478 . . . . . . . Cla02g00622 Cam02g0651 Cec02g0652 Cco02g0680 Clacu02g0659 Cmu02g0654 Cre02g0973 Cone12ag1078 Cone8ag1116 Cone3ag0989 Cone10ag1007 . Csa07g00737 . Cme01g00071 Blo04g00475 . . . . . . Bma08g00811 . . . Cma11g01736 Cma19g00589 . . Cpe14g00287 Cpe01g00429 . . . . . . . . . . . . . . . . Chy01g00077 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000853 1 2 2 1 2 3 4 3 3 3 3 3 5 3 3 5 3 6 4 3 3 2 1 4 4 4 2 4 3 1 90