Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1080 ATGGCGATGCATCTGAATGAAGAACAAACAGAACAGCATCAGCAAGTTAACCCATTAATCTTGGACTCTCTCTACTGTGAGGAAGGAAAATGGGAGGAAGAAGATGAAGAACAAGATGATGGAGATGAAGAAGATAGTTCAAACGATGGAAAAAACTCATCGTATTTCTTTCCTGGTGTTTTGTTAGAACAAGATCTGTTCTGGGAAGACAGTGAGCTTCTCACTCTGTTTTCCAAGGAGAGAGAACAGAAACAGACCATTGGATCAACAGATCCGACTCTGTCCAAATCTCGCCGTGAGGCAGTGGAATGGATGCTAAAAGTCAATGCCCATTACGGCTTTTCACCTCTTACTGCCATCTTAGCCATCAACTACCTCGATAGATTCCTCTGTAGCTTCCGTTTCCAGAAAGACAAGCCATGGATGATCCAGCTCGTCTCTGTTACGTGCATTTCCTTAGCTGCTAAAGTTGAAGAGATCCACGTCCCTCTTCTTCTAGACCTACAGGTGGAAGATACAAGGTACATTTTTGAGGCGAAGACGATACAAAGAATGGAGCTTTTAGTGCTATCAGCTCTTCAATGGAAGATGCATCCTGTGACCCCACTTTCATTCATTGATCATATCATCAGACAGCTTGGATTGAAGACCCACCTCCATTTTCACTTTCTTAAACGCTCTGAATCTCTTCTCCTCTCTCTAATCTCAGATACAAGATTTATTGGTTATCTGCCTTCTGTGTTGGCTACTGCAACAATGATGCGAGTTGTGGATCAGATTGAGACCTGTAATCCCATGGAATATCAGGACCAGCTTCTAAGTGTTCTTAAAATAAGCAAGAAATAA 846 42.32 MAMHLNEEQTEQHQQVNPLILDSLYCEEGKWEEEDEEQDDGDEEDSSNDGKNSSYFFPGVLLEQDLFWEDSELLTLFSKEREQKQTIGSTDPTLSKSRREAVEWMLKVNAHYGFSPLTAILAINYLDRFLCSFRFQKDKPWMIQLVSVTCISLAAKVEEIHVPLLLDLQVEDTRYIFEAKTIQRMELLVLSALQWKMHPVTPLSFIDHIIRQLGLKTHLHFHFLKRSESLLLSLISDTRFIGYLPSVLATATMMRVVDQIETCNPMEYQDQLLSVLKISKK 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8861641 8863456 + Conep12aG0111400.1 Cone12ag1080 449924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1080 281 CDD CYCLIN_AtCycD-like_rpt1 98 195 - -
Cone12ag1080 281 SMART cyclin_7 103 191 IPR013763 -
Cone12ag1080 281 Gene3D - 199 277 - -
Cone12ag1080 281 PANTHER CYCLINS 46 255 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone12ag1080 281 Pfam Cyclin, N-terminal domain 81 197 IPR006671 -
Cone12ag1080 281 ProSitePatterns Cyclins signature. 98 129 IPR048258 -
Cone12ag1080 281 MobiDBLite consensus disorder prediction 27 51 - -
Cone12ag1080 281 Gene3D - 94 198 - -
Cone12ag1080 281 SUPERFAMILY Cyclin-like 69 198 IPR036915 -
Cone12ag1080 281 MobiDBLite consensus disorder prediction 28 46 - -
Cone12ag1080 281 MobiDBLite consensus disorder prediction 1 20 - -
Cone12ag1080 281 CDD CYCLIN_AtCycD-like_rpt2 200 280 - -
Cone12ag1080 281 Pfam Cyclin, C-terminal domain 200 280 IPR004367 -
Cone12ag1080 281 FunFam CYCLIN D32 199 281 - -
Cone12ag1080 281 FunFam D3-type cyclin 91 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1080 Cone-Chr12:8861641 Cone20ag0209 Cone-Chr20:896176 4.10E-95 dispersed
Cone12ag1080 Cone-Chr12:8861641 Cone17ag0862 Cone-Chr17:6835105 9.04E-92 wgd
Cone12ag1080 Cone-Chr12:8861641 Cone7ag1351 Cone-Chr7:9821020 1.45E-79 wgd
Cone12ag1080 Cone-Chr12:8861641 Cone8ag1114 Cone-Chr8:9891151 9.24E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1080 K14505 - mdm:103436449 347.051