Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag1084 ATGGCTTTTCCACTGCCTCTAAGGAAGGAGAAAGTTGCAGTAAAAACAGCGACTGTGAATGGGGTATGGAATGCGGATTGTGCTTCCCAAGTGGAGTTCTACAGGGACGATGTGAAGCAGCTGCCATATAATAAATACTCTTGGCTGACGACACGTAGCTCTTACGCAAGCCTGGCCGAGAGCTTTTCCCTCCTCGCTCTTTCAACTCAGGACGACACCATTACCGATCAGCTCAAAAGTGGAGTTAGGGGGCTGATGCTAGACATGCATGACTACGAAGACGACATTTGGTTATGTTTCACCCAATGCTCCAACCCTACAGCTTATCAACTTGCTAAGAATGTTCTGAACGAGGTCAGAGTGTTCCTGGAATTGAACCCATTAGAAGTAGTCACCATTTTTATCGAAGATCATGTTGAATCTCCGAATGGACTTACTAAGCTGTTCGACGGGGCCGATCTTAGAAAATTCTTGTTCCCGCTTTCTCGGATGCCTAGAAATGGAGGAAACTGGCCTATCATTGATTATATGATCAAGAGAAATAAGCGCTTAGTTATTTTCACTTCTAGGCCGGATAAGGAAGTCTCCGAAGGCTTGGCATATAAGTGGAACTATATGGTCGAAAATCAATATAACAATGATCTAATACCGGATATTCAATGTTTGAACCGATCAGAATCTGCTCCAATGAATGATAAATCAAAGACGCTTGTTCTGATGAATTACTTCCGGGTTGACCCGGATATAAGTAATGCTTGCAAGTATAATGCAGAGTTCTTGGGTTACAACATGATCGGATGCTCTATAGTTGCTTCTAACCGGTTTCCTAATTTCATTGTTCTTGATTTTTACAAGAGGAGTGTTAATGGTGAAGTAGCGAGAGTTATAGACATGGCAAATGGTCGATCCATTTGTGGGTGTGACACTGTTGCCTTTTGCAAGTATTCCAAGATTGTACTAATTATTTGA 969 42.31 MAFPLPLRKEKVAVKTATVNGVWNADCASQVEFYRDDVKQLPYNKYSWLTTRSSYASLAESFSLLALSTQDDTITDQLKSGVRGLMLDMHDYEDDIWLCFTQCSNPTAYQLAKNVLNEVRVFLELNPLEVVTIFIEDHVESPNGLTKLFDGADLRKFLFPLSRMPRNGGNWPIIDYMIKRNKRLVIFTSRPDKEVSEGLAYKWNYMVENQYNNDLIPDIQCLNRSESAPMNDKSKTLVLMNYFRVDPDISNACKYNAEFLGYNMIGCSIVASNRFPNFIVLDFYKRSVNGEVARVIDMANGRSICGCDTVAFCKYSKIVLII 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8878209 8879898 - Conep12aG0111800.1 Cone12ag1084 449928

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag1084 322 SUPERFAMILY PLC-like phosphodiesterases 39 300 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Cone12ag1084 322 PANTHER UNCHARACTERIZED 35 313 IPR051057 GO:0008081(PANTHER)
Cone12ag1084 322 Gene3D Phosphatidylinositol (PI) phosphodiesterase 32 303 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag1084 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0990 Cone-Chr10:6708714 Cone12ag1084 Cone-Chr12:8878209 5.40E-99 dispersed
Cone12ag1084 Cone-Chr12:8878209 Cone3ag1181 Cone-Chr3:30475236 1.70E-102 dispersed
Cone12ag1083 Cone-Chr12:8876049 Cone12ag1084 Cone-Chr12:8878209 2.01E-75 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g394 . Blo15g00750 Bda06g01073 . Bpe07g00375 . . Bma12g00441 . . Cma02g00450 . Car02g00306 . . . . . . . . . . . . . . . . . . Cone12ag1084 . Cone3ag1181 Cone10ag0992 Lsi10g00528 . . . . . . . . . . . . Cmo02g00459 . . . . . Cpe14g00291 Cpe01g00437 . . . . . . . . . . . . . . . . . Cme11g00541
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0054417 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1